Gene omics information

Query gene ID	Zm.2245.1.A1_at
Gene name	pre-mRNA-splicing factor cwc15
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	Zm.2245.1.A1_at	CF625725	pre-mRNA-splicing factor cwc15	-	6e-7	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	S.X.	H.G.	Please select
0.67	85.8	Zm.6810.2.A1_a_at	CF631529	-	-	3e-1	At4g04632	ATP binding / protein kinase	S.X.	H.G.	Please select
0.53	69.1	Zm.3869.1.A1_at	CA399747	protein YIF1A	-	3e-21	At1g30890	integral membrane HRF1 family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.8401.2.S1_at	AI737075	-	-	1e+1	At5g48175	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.16935.1.S1_at	AY108819.1	hypothetical protein LOC100193218	-	2e+0	At4g22650	-	S.X.	H.G.	Please select
0.33	36.0	Zm.3895.2.A1_at	BM349822	chlorophyll a-b binding protein 4	-	2e-12	At3g47470	LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.0	98.4	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
8.8	98.1	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
7.8	97.9	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
5.3	96.9	GSM205422	Mo17xB73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
4.5	96.3	GSM205423	B73xMo17 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.8	95.5	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM205424	Mo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.4	94.9	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM205425	B73 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.2	94.5	GSM205436	B73xMo17 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	6e-107	387	Zm.2245.4.A1_at	BM350915	-	-	2e+0	At5g18300	anac088 (Arabidopsis NAC domain containing protein 88)	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.7309.1.S1_s_at	AF384036.1	nucleosome/chromatin assembly factor A /// nucleosome/chromatin assembly factor A	-	2e-3	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.7309.1.S1_at	AF384036.1	nucleosome/chromatin assembly factor A	-	2e-3	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	C.G.	S.X.	Please select
0.03	2e-2	40	Zm.17421.1.A1_at	CF626527	auxin-repressed protein	-	1e+0	At3g16870	zinc finger (GATA type) family protein	C.G.	S.X.	Please select
0.02	6e-2	38	Zm.5985.2.A1_at	AY104529.1	hypothetical protein LOC100217272	-	2e-34	At3g51270	ATP binding / catalytic/ protein serine/threonine kinase	C.G.	S.X.	Please select
0.02	6e-2	38	Zm.5985.2.S1_at	AY104529.1	Hypothetical protein LOC100217272	-	2e-34	At3g51270	ATP binding / catalytic/ protein serine/threonine kinase	C.G.	S.X.	Please select
0.03	6e-2	38	Zm.3385.1.A1_at	AW066673	C2H2 zinc finger protein	-	7e-1	At4g18930	cyclic phosphodiesterase	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.837.1.A1_at	BG320171	hypothetical protein LOC100272396	-	1e-40	At4g21660	proline-rich spliceosome-associated (PSP) family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.6246.1.S1_a_at	CB042879	hypothetical protein LOC100274295 /// hypothetical protein LOC100277252	-	1e-5	At2g22080	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	6e-7	56	Arabidopsis thaliana	At3g13200	820510	EMB2769 (EMBRYO DEFECTIVE 2769)	F:molecular_function unknown;P:nuclear mRNA splicing, via spliceosome;C:spliceosome;MOFPBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	2e-7	57	Glycine max	Gma.2337.2.S1_a_at	AW756331	-	-	1e-22	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	C.G.	S.X.	Please select
0.57	6e-175	613	Hordeum vulgare	Contig3898_at	Contig3898	-	-	1e-7	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	C.G.	S.X.	Please select
0.54	0	670	Oryza sativa	Os06g0106100	AK112060.1	-	Cwf15/Cwc15 cell cycle control protein familyprotein	6e-10	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	1e-11	71	Populus trichocarpa	PtpAffx.20105.1.S1_at	CV267754	hypothetical protein	-	1e-30	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.56	0	791	Triticum aestivum	Ta.26370.1.A1_at	CD491128	-	-	3e-8	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	C.G.	S.X.	Please select
0.06	3e-6	52	Vitis vinifera	1616011_at	CB349137	hypothetical protein LOC100260003	-	9e-28	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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