CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.2236.1.S1_at

Gene name peroxiredoxin bcp

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.48 61.3 Zm.2236.1.S1_at BQ538247 peroxiredoxin bcp - 9e-9 At3g26060 ATPRX Q S.X. H.G.
0.55 71.6 Zm.17197.1.A1_at CO531814 DNA binding protein - 3e-3 At3g51960 bZIP family transcription factor S.X. H.G.
0.39 45.6 Zm.2031.4.A1_at BM341698 metallothionein-like protein type 2 - 1e-1 At5g47550 cysteine protease inhibitor, putative / cystatin, putative S.X. H.G.
0.39 45.6 Zm.5112.1.A1_at AI600906 - - 2e-45 Atmg00480 - S.X. H.G.
0.38 44.2 Zm.14114.1.A1_at AY104741.1 C-terminal peptide-binding protein 1 - 6e-3 At1g48580 unknown protein S.X. H.G.
0.33 36.0 Zm.13808.2.S1_at CF631727 hypothetical protein LOC100279847 - 4e-7 At4g03240 FH (FRATAXIN HOMOLOG) S.X. H.G.
0.30 29.8 Zm.15177.1.A1_at BM339919 - - 5e+0 At5g45010 ATDSS1(V) (Arabidopsis dss1 homolog on chromosome V) S.X. H.G.
0.29 28.1 Zm.3773.1.A1_at AY110209.1 Hypothetical protein LOC100193094 - 4e+0 At4g18620 - S.X. H.G.
0.23 18.6 Zm.4776.2.A1_at CF026718 pyruvate dehydrogenase E1 component alpha subunit - 1e-39 At1g59900 AT-E1 ALPHA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.9 97.3 GSM320438 protocol: mRNA - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7 97.2 GSM320439 protocol: mRNA - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2 96.9 GSM253263 ZM_4d_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
5.2 96.9 GSM320440 protocol: mRNA - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9 96.7 GSM253257 ZM_2d_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
4.7 96.5 GSM253269 ZM_4.5d_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
4.6 96.4 GSM253256 ZM_2d_Mock_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
4.3 96.1 GSM202408 Zmet2 study 11-day seedling aerial tissue genotype B73 Rep6 GSE8188 Expression profiling of zmet2-m1 mutants relative to wild-type
4.2 96.0 GSM253270 ZM_4.5d_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
4.0 95.8 GSM202409 Zmet2 study 11-day seedling aerial tissue genotype B73 zmet2-m1 Rep6 GSE8188 Expression profiling of zmet2-m1 mutants relative to wild-type
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 36 Zm.779.1.A1_at BG842450 RING-H2 finger protein - 8e+0 At4g33020 ZIP9 C.G. S.X.
0.02 2e-1 36 Zm.18236.1.S1_at CN844983 DNL zinc finger family protein - 2e+0 At1g08830 CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) C.G. S.X.
0.02 2e-1 36 Zm.15375.1.S1_at BM378166 - - 2e+0 At1g60980 ATGA20OX4 (ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 4) C.G. S.X.
0.02 8e-1 34 Zm.9615.1.A1_at BM338182 hypothetical protein LOC100272870 - 5e-1 At3g49820 unknown protein C.G. S.X.
0.01 8e-1 34 Zm.6532.2.S1_at CO518285 DNA binding protein - 3e+0 At5g16390 CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1) C.G. S.X.
0.01 8e-1 34 Zm.4264.1.S1_at CA400096 hypothetical protein LOC100193823 /// hypothetical protein LOC100274195 /// non-green plastid inner envelope membrane protein - 4e+0 At3g62790 NADH-ubiquinone oxidoreductase-related C.G. S.X.
0.02 8e-1 34 Zm.2249.1.S1_at AY108383.1 transcription factor Dp-1 - 1e-20 At5g03415 DPB C.G. S.X.
0.02 8e-1 34 Zm.16290.1.S1_at AI677084 - - 2e-7 At1g74060 60S ribosomal protein L6 (RPL6B) C.G. S.X.
0.02 8e-1 34 Zm.14343.1.S1_at AI947494 - - 4e-18 At5g03415 DPB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 9e-9 61 Arabidopsis thaliana At3g26060 822203 ATPRX Q encodes periredoxin Q which decomposes peroxides and plays a role in the protection of the photosynthetic apparatus - - - C.G. S.X.
0.06 2e-1 38 Glycine max Gma.3317.2.S1_a_at CD398991 - - 4e-18 At3g26060 ATPRX Q C.G. S.X.
0.48 2e-165 581 Hordeum vulgare Contig5105_at Contig5105 - - 8e-9 At3g26060 ATPRX Q C.G. S.X.
0.42 2e-116 420 Oryza sativa Os06g0196300 AK059845.1 - Peroxiredoxin Q 9e-12 At3g26060 ATPRX Q C.G. S.X.
0.07 1e-2 42 Populus trichocarpa Ptp.7491.1.S1_at DN493441 peroxiredoxin - 2e-39 At3g26060 ATPRX Q C.G. S.X.
0.43 2e-160 565 Triticum aestivum Ta.6572.1.S1_at CK212997 Peroxiredoxin Q - 2e-10 At3g26060 ATPRX Q C.G. S.X.
0.09 7e-10 63 Vitis vinifera 1614204_at CD801669 hypothetical protein LOC100250698 - 2e-58 At3g26060 ATPRX Q C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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