Gene omics information

Query gene ID	Zm.2234.3.A1_a_at
Gene name	hypothetical protein LOC100273895
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	76.1	Zm.2234.3.A1_a_at	CO526105	hypothetical protein LOC100273895	-	9e-9	At4g17180	glycosyl hydrolase family 17 protein	S.X.	H.G.	Please select
0.77	92.1	Zm.18460.1.S1_at	CO521354	hypothetical protein LOC100216873	-	8e-3	At1g60430	ARPC3 (actin-related protein C3)	S.X.	H.G.	Please select
0.67	85.8	Zm.9649.1.A1_at	BM337167	hypothetical protein LOC100277264	-	1e+0	At1g43720	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.18085.1.S1_at	CK986038	hypothetical protein LOC100274126	-	5e-11	At5g13800	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.13712.1.S1_at	AY106534.1	-	-	4e+0	At2g46640	unknown protein	S.X.	H.G.	Please select
0.13	6.8	Zm.12687.2.S1_x_at	BQ294256	-	-	9e-1	At5g59010	protein kinase-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.9	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.5	96.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM206294	Lower pulvinus 2 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.8	95.5	GSM206331	Lower pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.7	95.4	GSM206298	Lower pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	1901	Zm.2234.3.A1_at	CO526105	hypothetical protein LOC100273895	-	9e-9	At4g17180	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please select
0.12	3e-50	198	Zm.2234.1.S1_a_at	CO526542	hypothetical protein LOC100276749 /// hypothetical protein LOC100276758	-	2e+1	At5g53486	unknown protein	C.G.	S.X.	Please select
0.02	6e-2	38	Zm.11831.1.S1_a_at	CA401860	glucan endo-1,3-beta-glucosidase 6	-	7e-5	At5g58090	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.4560.1.S1_at	AI734791	Pti1-like kinase-like	-	3e-47	At3g59350	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.368.1.A1_a_at	AF020813.1	glucose-6-phosphate/phosphate-translocator precursor /// hypothetical protein LOC100193334	-	4e-37	At1g61800	GPT2	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.368.1.A1_at	AF020813.1	glucose-6-phosphate/phosphate-translocator precursor	-	4e-37	At1g61800	GPT2	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.1062.1.A1_at	BM080197	-	-	1e+0	At4g38080	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.6974.1.A1_at	BM078279	hypothetical protein LOC100276561	-	8e-1	At5g57887	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.6974.1.A1_a_at	BM078279	hypothetical protein LOC100276561	-	8e-1	At5g57887	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	9e-9	61	Arabidopsis thaliana	At4g17180	827429	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	3e-3	44	Glycine max	GmaAffx.83409.1.S1_at	BU090905	-	-	2e-8	At4g17180	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please select
0.55	1e-83	309	Hordeum vulgare	Contig19828_at	Contig19828	-	-	3e-11	At4g17180	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please select
0.44	8e-94	345	Oryza sativa	Os09g0272300	AK102527.1	-	Glycoside hydrolase, family 17 protein	7e-11	At4g17180	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e-3	44	Populus trichocarpa	PtpAffx.204783.1.S1_at	pmrna9420	hypothetical protein	-	8e-10	At5g58480	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	9e-3	42	Triticum aestivum	TaAffx.85443.1.S1_at	CA622746	-	-	4e+0	At5g51360	-	C.G.	S.X.	Please select
0.15	2e-10	65	Vitis vinifera	1610118_at	CB974025	hypothetical protein LOC100265360	-	5e-13	At4g17180	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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