Gene omics information

Query gene ID	Zm.2227.1.A1_at
Gene name	hypothetical protein LOC100191593
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	74.4	Zm.2227.1.A1_at	BM381059	hypothetical protein LOC100191593	-	6e-3	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	S.X.	H.G.	Please select
0.32	33.4	Zm.1743.1.A1_at	BG840944	IAA19 - auxin-responsive Aux/IAA family member	-	2e-9	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	S.X.	H.G.	Please select
0.27	24.6	Zm.17834.1.S1_at	BM072688	hypothetical protein LOC100276988	-	4e-1	At2g28230	-	S.X.	H.G.	Please select
0.21	15.5	Zm.18382.1.S1_at	CO525381	barren stalk1	-	7e+0	At5g40981	unknown protein	S.X.	H.G.	Please select
0.18	11.6	Zm.17906.1.S1_at	CK786837	-	-	4e-23	At2g24330	unknown protein	S.X.	H.G.	Please select
0.11	5.3	Zm.18250.1.A1_at	CN844932	-	-	2e-3	At5g15850	COL1 (constans-like 1)	S.X.	H.G.	Please select
0.09	4.0	Zm.10233.1.A1_at	BM341551	-	-	3e-29	At3g55410	2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative	S.X.	H.G.	Please select
0.09	4.0	ZmAffx.951.1.A1_at	AI833422	-	-	8e-1	At1g60970	clathrin adaptor complex small chain family protein	S.X.	H.G.	Please select
0.06	2.3	Zm.14602.1.A1_at	CB380496	-	-	4e+0	At4g23720	unknown protein	S.X.	H.G.	Please select
0.06	2.3	Zm.18331.1.A1_at	AI770358	-	-	1e+0	At5g64667	IDL2 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.6	99.6	GSM253279	ZM_8d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
19.4	99.3	GSM385710	Deep-sowing 10d treatment TIBA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
16.3	99.0	GSM253278	ZM_8d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
15.2	98.9	GSM253249	ZM_12h_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
15.2	98.9	GSM253277	ZM_8d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
14.5	98.9	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
14.0	98.8	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM253246	ZM_12h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
11.8	98.6	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM253265	ZM_4d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	2e-69	262	Zm.1506.1.A1_at	X82184.1	defence-related protein	-	1e-1	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select
0.03	4e-2	38	Zm.10833.1.A1_at	AY109775.1	-	-	5e+0	At5g64140	RPS28 (RIBOSOMAL PROTEIN S28)	C.G.	S.X.	Please select
0.03	4e-2	38	Zm.10833.1.S1_at	AY109775.1	-	-	5e+0	At5g64140	RPS28 (RIBOSOMAL PROTEIN S28)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.8215.1.A1_at	CO532014	anther-specific proline-rich protein APG	-	8e-4	At4g30140	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.17181.1.S1_at	CK145306	-	-	7e-17	At1g64660	ATMGL (ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE)	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.6513.2.S1_a_at	CF043636	-	-	2e-15	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.5003.2.A1_at	CO518270	-	-	9e-2	At4g25570	ACYB-2	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.5003.1.A1_at	AB182641.1	hypothetical protein LOC100273009	-	1e-1	At4g25570	ACYB-2	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.5003.2.S1_at	CO518270	-	-	9e-2	At4g25570	ACYB-2	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	6e-3	42	Arabidopsis thaliana	At3g04720	819632	PR4 (PATHOGENESIS-RELATED 4)	Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	1e-1	38	Glycine max	GmaAffx.52146.1.S1_at	CA934966	-	-	2e-4	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select
0.44	9e-53	206	Hordeum vulgare	Contig6576_at	Contig6576	-	-	6e-6	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select
0.39	2e-44	180	Oryza sativa	Os11g0592000	AK121059.1	-	Barwin	7e-3	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	5e-1	36	Populus trichocarpa	PtpAffx.47069.1.A1_at	CV238066	hypothetical protein	-	2e-6	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.44	2e-40	167	Triticum aestivum	TaAffx.116570.1.S1_x_at	AL825027	-	-	2e-8	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select
0.11	8e-6	50	Vitis vinifera	1620518_at	CF201341.1	-	-	9e-14	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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