CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.221.1.A1_at

Gene name calcium-dependent protein kinase

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 77.8 Zm.221.1.A1_at U28376.1 calcium-dependent protein kinase - 4e-25 At3g20410 CPK9 (calmodulin-domain protein kinase 9) S.X. H.G.
0.80 94.0 Zm.6248.1.A1_at CB833922 - - 3e+0 At5g07890 myosin heavy chain-related S.X. H.G.
0.77 92.1 Zm.6246.1.S1_a_at CB042879 hypothetical protein LOC100274295 /// hypothetical protein LOC100277252 - 1e-5 At2g22080 unknown protein S.X. H.G.
0.73 89.9 Zm.16805.3.S1_x_at BM381902 basic endochitinase C - 2e-10 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) S.X. H.G.
0.60 77.8 Zm.2142.1.A1_at CK369102 hypothetical protein LOC100191429 - 1e-8 At2g42880 ATMPK20 S.X. H.G.
0.53 69.1 Zm.4061.1.S1_at AI834355 - - 3e+0 At3g25030 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.5 95.1 GSM320443 protocol: mRNA - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2 94.5 GSM206298 Lower pulvinus 60 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.0 94.0 GSM206334 Lower pulvinus 60 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.0 94.0 GSM206310 Lower pulvinus 60 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.8 93.5 GSM206297 Lower pulvinus 30 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.8 93.5 GSM206291 Upper pulvinus 30 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.7 93.2 GSM206328 Upper pulvinus 60 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.7 93.2 GSM206330 Lower pulvinus 2 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.6 92.9 GSM206324 Upper pulvinus 2 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.5 92.6 GSM206307 Lower pulvinus 5 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.78 0 1435 Zm.15857.1.A1_at D85039.1 calcium-dependent protein kinase - 2e-36 At1g50700 CPK33 C.G. S.X.
0.04 6e-10 65 Zm.39.1.S1_at D87042.1 Calcium-dependent protein kinase - 1e-25 At4g35310 CPK5 (calmodulin-domain protein kinase 5) C.G. S.X.
0.04 6e-10 65 Zm.39.1.S1_s_at D87042.1 Calcium-dependent protein kinase - 1e-25 At4g35310 CPK5 (calmodulin-domain protein kinase 5) C.G. S.X.
0.04 6e-10 65 Zm.20.1.S1_at D84408.1 calcium dependent protein kinase - 4e-25 At2g17290 CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) C.G. S.X.
0.07 2e-9 63 Zm.19155.1.S1_at CA401905 calcium-dependent protein kinase, isoform 2 - 9e-29 At4g23650 CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) C.G. S.X.
0.05 5e-7 56 Zm.6306.1.A1_a_at AY301062.2 calcium-dependent protein kinase ZmCPK11 - 9e-17 At1g35670 ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2) C.G. S.X.
0.05 5e-7 56 Zm.6306.1.A1_at AY301062.2 calcium-dependent protein kinase ZmCPK11 - 9e-17 At1g35670 ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2) C.G. S.X.
0.04 5e-7 56 Zm.19155.2.A1_x_at CO526374 - - 7e-9 At4g23650 CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) C.G. S.X.
0.04 5e-7 56 Zm.19155.2.A1_at CO526374 - - 7e-9 At4g23650 CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 4e-25 117 Arabidopsis thaliana At3g20410 821586 CPK9 (calmodulin-domain protein kinase 9) calmodulin-domain protein kinase CDPK isoform 9 (CPK9) - - - C.G. S.X.
0.24 9e-27 123 Glycine max GmaAffx.80245.1.S1_at BU927398 - - 9e-23 At4g04720 CPK21 C.G. S.X.
0.60 0 1425 Hordeum vulgare Contig5679_at Contig5679 - - 7e-42 At4g21940 CPK15 C.G. S.X.
0.60 0 1390 Oryza sativa Os07g0515100 AK074028.1 - Calcium-dependent protein kinase, isoform 2 (EC2.7.1.-) (CDPK 2) 2e-32 At1g50700 CPK33 C.G. S.X.
0.25 8e-21 103 Populus trichocarpa PtpAffx.203676.1.S1_at pmrna7282 calcium dependent protein kinase 15 - 1e-51 At4g04720 CPK21 C.G. S.X.
0.20 7e-175 615 Triticum aestivum Ta.2423.1.S1_at BT009467.1 Calcium-dependent protein kinase - 3e-23 At3g20410 CPK9 (calmodulin-domain protein kinase 9) C.G. S.X.
0.08 3e-20 99 Vitis vinifera 1621727_s_at CF511469 similar to calmodulin-like domain protein kinase isoenzyme gamma - 3e-14 At4g21940 CPK15 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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