Gene omics information

Query gene ID	Zm.2167.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.2167.1.A1_at	AI714599	-	-	9e-1	At5g16780	DOT2 (DEFECTIVELY ORGANIZED TRIBUTARIES 2)	S.X.	H.G.	Please select
0.50	65.7	Zm.4730.1.A1_at	BM078833	hypothetical protein LOC100194390	-	6e-4	At4g25570	ACYB-2	S.X.	H.G.	Please select
0.44	55.7	Zm.5261.1.A1_at	CF041434	hypothetical protein LOC100273065	-	2e-37	At2g41540	GPDHC1	S.X.	H.G.	Please select
0.32	33.4	Zm.10200.1.A1_at	BM379455	hypothetical protein LOC100274487	-	4e-6	At4g30020	subtilase family protein	S.X.	H.G.	Please select
0.31	31.6	Zm.11983.1.A1_at	BM382368	-	-	2e-1	At4g16240	unknown protein	S.X.	H.G.	Please select
0.27	24.6	Zm.16750.1.A1_at	CA401312	hypothetical protein LOC100191935	-	5e-1	At1g04445	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.25	21.3	Zm.277.1.A1_at	BM334978	hypothetical protein LOC100272982	-	1e+0	At1g11210	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.6	98.3	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
6.5	97.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-2	40	Zm.6616.1.A1_at	CF003465	-	-	8e-1	At5g66300	NAC105 (NAC DOMAIN CONTAINING PROTEIN 105)	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.14519.1.A1_at	AI691490	cell wall integrity protein scw1	-	8e-7	At3g21215	RNA-binding protein, putative	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.3165.1.A1_at	CF633794	terpene synthase 7	-	2e+0	At3g61840	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.17545.1.A1_at	BM350102	hypothetical protein LOC100273664	-	1e-1	At1g67856	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.01	6e+0	32	ZmAffx.729.1.S1_at	AI740018	-	-	2e-4	At4g02450	glycine-rich protein	C.G.	S.X.	Please select
0.01	6e+0	32	ZmAffx.33.1.A1_at	AI657429	t-snare	-	2e-1	At4g00890	proline-rich family protein	C.G.	S.X.	Please select
0.01	6e+0	32	ZmAffx.33.1.S1_at	AI657429	-	-	2e-1	At4g00890	proline-rich family protein	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.9559.1.S1_at	AY461584.1	inward rectifying shaker K+ channel	-	6e-21	At5g46240	KAT1 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1)	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.9559.1.S1_s_at	AY461584.1	inward rectifying shaker K+ channel	-	6e-21	At5g46240	KAT1 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	9e-1	36	Arabidopsis thaliana	At5g16780	831541	DOT2 (DEFECTIVELY ORGANIZED TRIBUTARIES 2)	Encodes a protein belonging to SART-1 family. The gene is expressed in the basal region of the developing embryo during heart stage. Phenotypic analyses of dot2 mutants suggest that this protein plays a role in root, shoot, and flower development. dot2 mutants are dwarved plants that display an aberrant spurred leaf venation pattern and fail to flower. In the roots DOT2 appears to be require for normal meristem organization and maintenance and the proper expression of PIN and PLT genes.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e-3	44	Glycine max	GmaAffx.60726.1.S1_at	BU090655	-	-	3e-6	At5g16780	DOT2 (DEFECTIVELY ORGANIZED TRIBUTARIES 2)	C.G.	S.X.	Please select
0.02	7e+0	32	Hordeum vulgare	Contig7852_at	Contig7852	-	-	5e-11	At2g20580	RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A)	C.G.	S.X.	Please select
0.49	4e-109	397	Oryza sativa	Os02g0511500	AK105023.2	-	Squamous-cell carcinoma T-cell-recognized antigen(Fragment)	3e+0	At5g16780	DOT2 (DEFECTIVELY ORGANIZED TRIBUTARIES 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e-2	42	Populus trichocarpa	PtpAffx.156901.1.S1_at	CF235342	hypothetical protein	-	6e-59	At5g16780	DOT2 (DEFECTIVELY ORGANIZED TRIBUTARIES 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	4e+0	34	Triticum aestivum	TaAffx.84743.1.S1_s_at	CA629958	-	-	3e-2	At5g39190	GER2 (GERMIN-LIKE PROTEIN 2)	C.G.	S.X.	Please select
0.04	4e-6	52	Vitis vinifera	1621250_at	CF207474	hypothetical protein LOC100266959	-	3e-51	At5g16780	DOT2 (DEFECTIVELY ORGANIZED TRIBUTARIES 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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