Gene omics information

Query gene ID	Zm.2163.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.2163.1.S1_at	AY105593.1	-	-	2e-4	At3g59400	GUN4	S.X.	H.G.	Please select
0.63	81.1	Zm.17572.2.S1_at	CF972387	heat- and acid-stable phosphoprotein	-	3e-8	At5g46020	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.3135.1.S1_at	CD981826	catalytic/ protein phosphatase type 2C	-	2e-13	At1g47380	protein phosphatase 2C-related / PP2C-related	S.X.	H.G.	Please select
0.50	65.7	Zm.16843.1.S1_at	AI978092	-	-	2e-47	At1g50370	serine/threonine protein phosphatase, putative	S.X.	H.G.	Please select
0.40	48.5	Zm.16988.1.A1_at	L10634.1	beta-7 tubulin	-	4e-117	At5g23860	TUB8	S.X.	H.G.	Please select
0.40	48.5	Zm.3168.1.A1_x_at	AW331178	-	-	5e-2	At3g51960	bZIP family transcription factor	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.5	99.5	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
10.5	98.4	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.6	98.3	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.0	98.2	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.4	98.1	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.1	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.6	97.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e-4	48	Zm.4699.1.S1_at	CK787284	hypothetical protein LOC100273144	-	3e+0	At5g63480	unknown protein	C.G.	S.X.	Please select
0.01	3e-2	40	Zm.9645.1.S1_at	AY207047.1	ZmMybst1	-	1e-8	At3g16350	myb family transcription factor	C.G.	S.X.	Please select
0.02	3e-2	40	Zm.4064.1.A1_at	AI834361	Hypothetical protein LOC100193331	-	2e-1	At3g09700	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.01	3e-2	40	Zm.388.1.A1_at	AF047852.1	terminal ear1	-	3e-7	At3g26120	TEL1 (TERMINAL EAR1-LIKE 1)	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.6820.1.A1_at	AI676986	thioredoxin	-	1e-5	At3g07090	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.6078.1.S1_at	CF628917	hypothetical protein LOC100277511	-	2e+0	At1g51090	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.5996.1.A1_at	BM339606	hypothetical protein LOC100192012	-	1e-20	At3g27060	TSO2 (TSO meaning 'ugly' in Chinese)	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.2352.1.S1_at	CF009846	hypothetical protein LOC100277532	-	3e-1	At5g63480	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.14324.3.S1_at	AY105596.1	Hypothetical protein LOC100193273	-	3e-23	At3g27060	TSO2 (TSO meaning 'ugly' in Chinese)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-4	48	Arabidopsis thaliana	At3g59400	825109	GUN4	GUN, genomes uncoupled, is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast. Binds to the magnesium chelatase complex and promotes formation of the substrate,a tetrapyrrole signaling molecule. Porphyrin-binding protein that enhances the activity of Mg-chelatase. Although required for chlorophyll accumulation under normal growth conditions, GUN4 is not essential for chlorophyll synthesis.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e-3	46	Glycine max	PsAffx.psML007xE20f_at	PsAffx.psML007xE20f	-	-	5e+0	At5g53490	thylakoid lumenal 17.4 kDa protein, chloroplast	C.G.	S.X.	Please select
0.28	2e-43	176	Hordeum vulgare	Contig14695_at	Contig14695	-	-	2e-4	At5g46780	VQ motif-containing protein	C.G.	S.X.	Please select
0.42	2e-46	188	Oryza sativa	Os01g0757600	AK101933.1	-	Myosin heavy chain-like protein (Fragment)	1e+0	At1g32350	AOX1D (alternative oxidase 1D)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e-4	48	Populus trichocarpa	PtpAffx.16419.1.S1_at	CX654747	hypothetical protein	-	3e-1	At3g25640	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	4e-3	44	Triticum aestivum	TaAffx.26556.1.S1_at	CA687662	-	-	4e+0	At4g28510	ATPHB1 (PROHIBITIN 1)	C.G.	S.X.	Please select
0.02	3e-1	36	Vitis vinifera	1619249_at	CF211945	-	-	5e-6	At2g17800	ARAC1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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