Gene omics information

Query gene ID	Zm.215.1.A1_at
Gene name	DNA mismatch repair protein MSH2
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	74.4	Zm.215.1.A1_at	AW065215	DNA mismatch repair protein MSH2	-	4e-26	At3g18524	MSH2 (MUTS HOMOLOG 2)	S.X.	H.G.	Please select
0.73	89.9	Zm.722.1.A1_at	AW288498	chalcone synthase	-	3e-8	At5g13930	TT4 (TRANSPARENT TESTA 4)	S.X.	H.G.	Please select
0.60	77.8	Zm.5726.1.A1_at	BM072874	hypothetical protein LOC100191332	-	2e-4	At4g28830	methyltransferase/ nucleic acid binding	S.X.	H.G.	Please select
0.44	55.7	Zm.4225.1.S1_at	AW225317	hypothetical protein LOC100192639	-	3e-6	At1g04960	-	S.X.	H.G.	Please select
0.40	48.5	Zm.8113.1.S1_at	BM072984	-	-	3e-1	At1g80940	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.443.1.S1_at	AF031083.2	aluminum-induced protein	-	1e-1	At5g46730	glycine-rich protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.2	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.7	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	7e-1	36	Zm.3526.1.S1_at	CF041723	hypothetical protein LOC100272649	-	3e+0	At2g01890	PAP8 (PURPLE ACID PHOSPHATASE 8)	C.G.	S.X.	Please select
0.01	7e-1	36	Zm.16311.2.S1_at	BE575048	hypothetical protein LOC100192600	-	5e-93	At5g02960	40S ribosomal protein S23 (RPS23B)	C.G.	S.X.	Please select
0.01	3e+0	34	Zm.628.1.A1_at	AF244677.1	glutathione S-transferase12	-	6e-1	At3g21960	-	C.G.	S.X.	Please select
0.01	3e+0	34	Zm.629.1.S1_at	AF127021.1	RNA polymerase T phage-like 1	-	9e-15	At1g68990	DNA-directed RNA polymerase, mitochondrial (RPOMT)	C.G.	S.X.	Please select
0.01	3e+0	34	Zm.5738.1.S1_at	AI637188	-	-	6e-9	At3g20630	UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14)	C.G.	S.X.	Please select
0.01	3e+0	34	Zm.543.1.S1_at	AF244678.1	glutathione transferase13	-	2e+0	At1g72210	basic helix-loop-helix (bHLH) family protein (bHLH096)	C.G.	S.X.	Please select
0.01	3e+0	34	Zm.303.1.S1_at	AF236373.1	hypersensitive induced reaction1	-	1e-42	At5g62740	band 7 family protein	C.G.	S.X.	Please select
0.01	3e+0	34	Zm.13720.1.S1_s_at	AY106348.1	MPK17-2 - putative MAPK	-	1e-18	At3g18040	MPK9 (MAP KINASE 9)	C.G.	S.X.	Please select
0.01	3e+0	34	Zm.13720.1.S1_at	AY106348.1	-	-	1e-18	At3g18040	MPK9 (MAP KINASE 9)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	4e-26	121	Arabidopsis thaliana	At3g18524	821383	MSH2 (MUTS HOMOLOG 2)	Encodes a DNA mismatch repair homolog of human MutS gene, MSH6. MSH2 is involved in maintaining genome stability and repressing recombination of mismatched heteroduplexes.There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2 has different binding specificity to different mismatches in combination with MSH3, MSH6, or MSH7.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	7e-10	67	Glycine max	Gma.7354.1.A1_at	BM270835	-	-	3e-11	At3g18524	MSH2 (MUTS HOMOLOG 2)	C.G.	S.X.	Please select
0.33	0	751	Hordeum vulgare	Contig14860_at	Contig14860	-	-	1e-27	At3g18524	MSH2 (MUTS HOMOLOG 2)	C.G.	S.X.	Please select
0.58	6e-119	430	Oryza sativa	Os05g0274200	9633.m01744	-	DNA mismatch repair protein MSH2 (MUS1)	7e-12	At3g18524	MSH2 (MUTS HOMOLOG 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	2e-13	79	Populus trichocarpa	PtpAffx.210451.1.S1_at	pmrna20521	hypothetical protein	-	1e-62	At3g18524	MSH2 (MUTS HOMOLOG 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	5e-56	220	Triticum aestivum	Ta.8989.1.A1_at	BQ162736	-	-	2e-5	At3g18524	MSH2 (MUTS HOMOLOG 2)	C.G.	S.X.	Please select
0.01	5e-1	36	Vitis vinifera	1619763_at	CB006549	-	-	9e-2	At2g23240	plant EC metallothionein-like family 15 protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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