Gene omics information

Query gene ID	Zm.2142.1.A1_at
Gene name	hypothetical protein LOC100191429
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.64	81.7	Zm.2142.1.A1_at	CK369102	hypothetical protein LOC100191429	-	1e-8	At2g42880	ATMPK20	S.X.	H.G.	Please select
0.82	94.6	Zm.2978.1.S1_at	CD981283	peptidyl-tRNA hydrolase	-	4e-10	At1g18440	peptidyl-tRNA hydrolase family protein	S.X.	H.G.	Please select
0.80	94.0	ZmAffx.289.1.A1_at	AI670251	-	-	2e+1	At5g15430	calmodulin-binding protein-related	S.X.	H.G.	Please select
0.75	90.8	Zm.16527.1.A1_s_at	CF637778	hypothetical protein LOC100277800	-	5e-13	At1g03260	-	S.X.	H.G.	Please select
0.75	90.8	Zm.16527.1.A1_at	CF637778	hypothetical protein LOC100277800	-	5e-13	At1g03260	-	S.X.	H.G.	Please select
0.74	90.3	Zm.14702.1.A1_at	CF628124	Ribosomal protein S11	-	1e+0	At5g46730	glycine-rich protein	S.X.	H.G.	Please select
0.64	81.7	Zm.16530.1.A1_at	BM953023	-	-	3e-51	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	S.X.	H.G.	Please select
0.61	79.5	Zm.7126.2.S1_at	AY110592.1	-	-	2e-9	At3g51460	RHD4 (ROOT HAIR DEFECTIVE4)	S.X.	H.G.	Please select
0.60	77.8	Zm.353.1.S1_at	CF636600	profilin	-	2e-12	At4g29350	PFN2 (PROFILIN 2)	S.X.	H.G.	Please select
0.43	52.8	Zm.4061.1.S1_at	AI834355	-	-	3e+0	At3g25030	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.5	98.6	GSM253269	ZM_4.5d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
8.0	98.0	GSM253270	ZM_4.5d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
6.7	97.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM253268	ZM_4.5d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
4.6	96.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	7e-64	244	Zm.2991.1.A1_at	CO532456	hypothetical protein LOC100191961	-	3e-17	At1g04010	phosphatidate-sterol O-acyltransferase/ phosphatidylcholine-sterol O-acyltransferase/ phosphatidylethanolamine-sterol O-acyltransferase	C.G.	S.X.	Please select
0.01	5e-3	42	Zm.1416.1.S1_at	CK787234	mitochondrial 2-oxoglutarate/malate carrier protein	-	1e-2	At5g09470	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.5643.1.A1_at	AY425817.1	mitogen activated protein kinase 6	-	6e-55	At5g19010	MPK16	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.3418.1.A1_at	CF624427	-	-	2e+0	At4g33465	SCRL22 (SCR-Like 22)	C.G.	S.X.	Please select
0.01	1e+0	34	ZmAffx.12.1.S1_at	AY562491.1	kaurene synthase2	-	1e-7	At4g02780	GA1 (GA REQUIRING 1)	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.9282.1.A1_at	BM268851	WRKY74 - superfamily of TFs having WRKY and zinc finger domains	-	5e+0	At3g04770	RPSAb (40S ribosomal protein SA B)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.8470.1.S1_at	AF493561.1	sucrose-phosphatase	-	4e+0	At5g17220	ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.804.1.A1_at	CF627442	chaperone protein dnaJ	-	1e-5	At5g48030	GFA2 (GAMETOPHYTIC FACTOR 2)	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.7715.1.A1_at	AY107162.1	wiscott-Aldrich syndrome, C-terminal	-	5e-1	At5g12320	ankyrin repeat family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-8	61	Arabidopsis thaliana	At2g42880	818888	ATMPK20	member of MAP Kinase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	7e-8	59	Glycine max	Gma.8143.1.S1_at	BG725425	-	-	4e-2	At1g53510	ATMPK18	C.G.	S.X.	Please select
0.20	5e-56	218	Hordeum vulgare	Contig6092_at	Contig6092	-	-	2e-54	At2g42880	ATMPK20	C.G.	S.X.	Please select
0.19	1e-44	182	Oryza sativa	Os05g0582400	AK069254.1	-	Blast and wounding induced mitogen-activatedprotein kinase	6e-43	At1g53510	ATMPK18	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	7e-8	59	Populus trichocarpa	PtpAffx.205653.1.S1_at	pmrna11162	hypothetical protein	-	5e-178	At2g42880	ATMPK20	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	2e-63	244	Triticum aestivum	Ta.25413.1.A1_s_at	CK153790	-	-	4e-40	At2g42880	ATMPK20	C.G.	S.X.	Please select
0.02	9e-1	34	Vitis vinifera	1619722_at	CF213692	hypothetical protein LOC100246022	-	7e-26	At5g19010	MPK16	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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