CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.2140.1.S1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.78 92.5 Zm.2140.1.S1_at AW453259 - - 6e-1 At4g14455 ATBET12 S.X. H.G.
0.76 91.1 Zm.661.2.A1_at AF290415.1 chloroplast RNA splicing1 - 6e-2 At3g18390 EMB1865 (embryo defective 1865) S.X. H.G.
0.74 90.3 Zm.16709.1.A1_at CN844137 - - 2e+0 At4g21560 VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1) S.X. H.G.
0.72 88.6 Zm.3457.1.A1_at AW171820 hypothetical protein LOC100193080 - 2e-19 At3g21640 TWD1 (TWISTED DWARF 1) S.X. H.G.
0.71 88.2 Zm.6885.1.S1_at AY106322.1 cell division control protein 50 - 6e-1 At3g12740 ALIS1 (ALA-INTERACTING SUBUNIT 1) S.X. H.G.
0.65 82.1 Zm.6614.1.A1_at CO533019 coronatine-insensitive protein 1 - 1e+0 At2g26030 F-box family protein S.X. H.G.
0.65 82.1 Zm.7127.1.A1_at BM266653 nonspecific lipid-transfer protein - 8e+0 At5g53300 UBC10 (ubiquitin-conjugating enzyme 10) S.X. H.G.
0.65 82.1 Zm.7121.2.S1_at AF457960.1 - - 5e-6 At3g12120 FAD2 (FATTY ACID DESATURASE 2) S.X. H.G.
0.63 81.1 Zm.6079.1.S1_at BM268227 ribosomal protein L25 - 1e-53 At2g39460 RPL23AA (RIBOSOMAL PROTEIN L23AA) S.X. H.G.
0.57 75.1 Zm.14137.2.S1_at CA402353 hypothetical protein LOC100193311 - 2e-35 At1g77130 PGSIP2 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.8 99.6 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.5 99.4 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.8 99.2 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.2 99.1 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6 98.8 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3 98.4 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1 98.4 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0 98.0 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2 97.8 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2 97.4 GSM320461 protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 34 ZmAffx.501.1.S1_at AI691747 - - 8e-1 At5g62100 ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2) C.G. S.X.
0.02 1e+0 34 ZmAffx.501.1.A1_at AI691747 - - 8e-1 At5g62100 ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2) C.G. S.X.
0.02 1e+0 34 Zm.14497.9.S1_at BM382119 - - 2e-15 At5g59910 HTB4 C.G. S.X.
0.02 1e+0 34 Zm.13572.1.A1_at AY107943.1 - - 5e+0 At5g28160 kelch repeat-containing F-box family protein C.G. S.X.
0.01 4e+0 32 Zm.957.1.S1_a_at M36087.1 mitochondrial F-1-ATPase subunit 2 - 2e-165 At5g08670 ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism C.G. S.X.
0.02 4e+0 32 Zm.928.1.S1_at CO528002 Hypothetical protein LOC100194063 - 5e-17 At5g65260 polyadenylate-binding protein family protein / PABP family protein C.G. S.X.
0.01 4e+0 32 Zm.687.1.A1_at BM080576 PL3K2 - 2e-1 At1g24520 BCP1 C.G. S.X.
0.01 4e+0 32 Zm.6586.1.A1_at AY106046.1 hypothetical protein LOC100273042 - 5e-20 At1g61150 - C.G. S.X.
0.01 4e+0 32 Zm.617.1.A1_at AF326505.1 tonoplast membrane integral protein ZmTIP4-1 - 4e-2 At2g36830 GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-1 36 Arabidopsis thaliana At4g14455 827091 ATBET12 Encodes a Bet1/Sft1-like SNARE protein, which can only partially suppresses the temperature-sensitive growth defect in sft1-1 yeast cells; however, it cannot support the deletion of the yeast BET1 gene (bet1Δ). In yeast, Bet1p is the v-SNARE (soluble N-ethylmaleimide-sensitive factor adaptor protein receptor, V-type) involved in trafficking between the ER and Golgi. - - - C.G. S.X.
0.02 3e-3 44 Glycine max HgAffx.16737.1.S1_at CD748384 - - 1e+0 At4g02590 UNE12 (unfertilized embryo sac 12) C.G. S.X.
0.23 1e-68 260 Hordeum vulgare Contig10810_at Contig10810 - - 8e-1 At5g13290 CRN (CORYNE) C.G. S.X.
0.30 8e-79 295 Oryza sativa Os01g0231900 AK073280.1 - KH, type 1 domain containing protein 1e-2 At3g16230 RNA binding / catalytic C.G. S.X.
0.08 6e-11 69 Populus trichocarpa PtpAffx.200638.1.S1_at pmrna1241 hypothetical protein - 6e-21 At3g16230 RNA binding / catalytic C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.56259.1.S1_at CA655086 - - 8e-1 At1g49770 RGE1 (RETARDED GROWTH OF EMBRYO 1) C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1621553_at CB002757 - - 2e+0 At4g15802 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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