Gene omics information

Query gene ID	Zm.2034.1.S1_at
Gene name	hypothetical protein LOC100277458
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.42	51.3	Zm.2034.1.S1_at	BE123271	hypothetical protein LOC100277458	-	1e+0	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	S.X.	H.G.	Please select
0.50	65.7	Zm.14898.1.A1_x_at	BM351319	-	-	4e+0	At3g43800	ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)	S.X.	H.G.	Please select
0.50	65.7	Zm.18084.1.A1_at	CD997940	-	-	8e-7	At1g16870	mitochondrial 28S ribosomal protein S29-related	S.X.	H.G.	Please select
0.36	41.3	Zm.1230.1.A1_at	CA403072	hypothetical protein LOC100191965	-	2e+0	At4g05070	unknown protein	S.X.	H.G.	Please select
0.32	33.4	Zm.9213.1.A1_at	BM267362	hypothetical protein LOC100278667	-	5e+0	At5g45590	unknown protein	S.X.	H.G.	Please select
0.16	9.4	Zm.5230.1.A1_at	CA404914	acyl-desaturase	-	2e-17	At2g43710	SSI2	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
35.0	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.7	99.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.9	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.3	99.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.0	99.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.5	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.5	99.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	2e-31	135	Zm.3792.1.S1_at	CA826763	hypothetical protein LOC100276631	-	9e-2	At2g45450	ZPR1 (LITTLE ZIPPER 1)	C.G.	S.X.	Please select
0.10	1e-8	59	Zm.10511.1.S1_at	CF011340	-	-	1e+0	At1g68765	IDA (INFLORESCENCE DEFICIENT IN ABSCISSION)	C.G.	S.X.	Please select
0.04	4e-5	48	Zm.13449.1.A1_at	CF043720	hypothetical protein LOC100279539	-	5e+0	At5g07600	oleosin / glycine-rich protein	C.G.	S.X.	Please select
0.02	2e-3	42	Zm.19286.1.S1_at	AI621791	hypothetical protein LOC100275478	-	7e-1	At3g25855	unknown protein	C.G.	S.X.	Please select
0.03	1e-2	40	Zm.9940.1.A1_at	BM339055	-	-	3e-2	At5g26860	LON1 (LON PROTEASE 1)	C.G.	S.X.	Please select
0.02	1e-2	40	Zm.8902.1.A1_at	CD441345	glycosyltransferase-like	-	6e-11	At1g18690	transferase/ transferase, transferring glycosyl groups	C.G.	S.X.	Please select
0.05	4e-2	38	Zm.8927.1.S1_at	BQ578253	-	-	5e-3	At2g41905	unknown protein	C.G.	S.X.	Please select
0.04	4e-2	38	Zm.2015.1.A1_at	AY104789.1	-	-	6e-3	At2g41905	unknown protein	C.G.	S.X.	Please select
0.06	4e-2	38	Zm.2015.2.S1_at	BQ577950	pollen-specific arabinogalacta protein BAN102	-	6e-3	At2g41905	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At1g18800	838462	NRP2 (NAP1-RELATED PROTEIN 2)	Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP1. Bind histones Histone2A and Histone2B and associate with chromatin in vivo.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e-2	40	Glycine max	PsAffx.C105000021_at	PsAffx.C105000021	-	-	1e-1	At2g42310	unknown protein	C.G.	S.X.	Please select
0.10	4e-2	38	Hordeum vulgare	Contig13705_at	Contig13705	-	-	3e-1	At2g41905	unknown protein	C.G.	S.X.	Please select
0.08	3e-3	44	Oryza sativa	Os02g0718100	CB964573	-	Conserved hypothetical protein	1e-1	At5g05550	transcription factor	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.216057.1.S1_at	pmrna30617	hypothetical protein	-	4e+0	At2g21100	disease resistance-responsive protein-related / dirigent protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	9e-2	38	Triticum aestivum	Ta.28909.1.S1_at	CA619634	-	-	4e-3	At2g41905	unknown protein	C.G.	S.X.	Please select
0.02	7e+0	30	Vitis vinifera	1621169_at	CB341996	hypothetical protein LOC100265382	-	3e-1	At5g66200	ARO2 (ARMADILLO REPEAT ONLY 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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