Gene omics information

Query gene ID	Zm.2032.1.S1_at
Gene name	F-box protein interaction domain containing protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.2032.1.S1_at	AW566370	F-box protein interaction domain containing protein	-	2e-12	At4g00360	CYP86A2 (CYTOCHROME P450 86 A2)	S.X.	H.G.	Please select
0.50	65.7	Zm.14791.1.A1_at	CF628382	ADP-ribosylation factor-like protein 8B	-	7e-9	At5g67560	ATARLA1D (ADP-ribosylation factor-like A1D)	S.X.	H.G.	Please select
0.36	41.3	Zm.7582.1.A1_at	BM073867	hypothetical protein LOC100216795	-	2e+0	At5g03440	unknown protein	S.X.	H.G.	Please select
0.30	29.8	Zm.17644.1.A1_at	CK371385	-	-	6e+0	At1g55780	metal ion binding	S.X.	H.G.	Please select
0.15	8.6	Zm.12801.1.A1_at	CO524502	MON1	-	2e+0	At4g15053	unknown protein	S.X.	H.G.	Please select
0.08	3.4	Zm.16590.3.A1_at	AY104237.1	DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide	-	2e-34	At5g51940	NRPB6A	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.6	99.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.2	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.0	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.5	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0	98.7	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
12.9	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-10	67	Zm.16676.1.A1_at	CF650507	hypothetical protein LOC100192011	-	6e+0	At5g14690	unknown protein	C.G.	S.X.	Please select
0.02	2e-4	48	Zm.9008.2.S1_at	AI665626	-	-	3e+0	At3g27080	TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3)	C.G.	S.X.	Please select
0.02	2e-4	48	Zm.9008.2.A1_a_at	AI665626	delta zein structural18 /// prolamin /// prolamin	-	3e+0	At3g27080	TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3)	C.G.	S.X.	Please select
0.01	2e-4	48	Zm.818.2.A1_at	CO531833	Hypothetical protein LOC100216560	-	1e+1	At5g67490	unknown protein	C.G.	S.X.	Please select
0.01	2e-4	48	Zm.818.2.S1_at	CO531833	hypothetical protein LOC100216560	-	1e+1	At5g67490	unknown protein	C.G.	S.X.	Please select
0.01	2e-4	48	Zm.818.2.A1_a_at	CO531833	hypothetical protein LOC100194015 /// hypothetical protein LOC100276527 /// hypothetical protein LOC100277252	-	1e+1	At5g67490	unknown protein	C.G.	S.X.	Please select
0.01	2e-4	48	Zm.818.2.A1_x_at	CO531833	Hypothetical protein LOC100216560	-	1e+1	At5g67490	unknown protein	C.G.	S.X.	Please select
0.04	2e-4	48	Zm.659.1.S1_at	AF366297.1	hypothetical protein LOC100191749	-	4e-3	At1g69500	electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding	C.G.	S.X.	Please select
0.01	2e-4	48	Zm.6079.2.S1_at	CO533635	60S ribosomal protein L23a	-	2e-62	At2g39460	RPL23AA (RIBOSOMAL PROTEIN L23AA)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	2e-12	75	Arabidopsis thaliana	At4g00360	828019	CYP86A2 (CYTOCHROME P450 86 A2)	Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at moderate levels in flowers, leaves, roots and stems.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	4e-23	111	Glycine max	Gma.11025.1.S1_at	CD390437	-	-	2e-23	At2g45970	CYP86A8	C.G.	S.X.	Please select
0.21	2e-28	127	Hordeum vulgare	Contig6865_at	Contig6865	-	-	2e-7	At4g00360	CYP86A2 (CYTOCHROME P450 86 A2)	C.G.	S.X.	Please select
0.60	0	1550	Oryza sativa	Os01g0854800	AK109676.1	-	Cytochrome P450 86A1 (EC 1.14.-.-) (CYPLXXXVI)(P450-dependent fatty acid omega-hydroxylase)	3e-10	At4g00360	CYP86A2 (CYTOCHROME P450 86 A2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	5e-10	67	Populus trichocarpa	PtpAffx.211547.1.S1_at	pmrna22630	cytochrome P450	-	5e-42	At4g00360	CYP86A2 (CYTOCHROME P450 86 A2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.21	1e-158	561	Triticum aestivum	TaAffx.112465.2.S1_at	CA623711	-	-	3e-13	At4g00360	CYP86A2 (CYTOCHROME P450 86 A2)	C.G.	S.X.	Please select
0.02	4e-4	46	Vitis vinifera	1621885_at	CK138210.1	-	-	4e-16	At5g58860	CYP86A1 (CYTOCHROME P450 86 A1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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