Gene omics information

Query gene ID	Zm.2031.1.A1_at
Gene name	csu1120 protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.2031.1.A1_at	AY103664.1	csu1120 protein	-	5e-4	At3g50550	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.19094.1.S1_at	CO522607	hypothetical protein LOC100279575	-	2e-4	At1g14540	anionic peroxidase, putative	S.X.	H.G.	Please select
0.43	52.8	Zm.1706.1.A1_at	BF728433	hypothetical protein LOC100276850	-	1e+0	At5g47870	unknown protein	S.X.	H.G.	Please select
0.38	44.2	Zm.13794.1.S1_at	AY104961.1	-	-	7e-1	At5g53280	PDV1 (PLASTID DIVISION1)	S.X.	H.G.	Please select
0.36	41.3	Zm.5715.1.A2_at	BI542710	O-methyltransferase ZRP4	-	3e+0	At5g25752	RBL11 (RHOMBOID-LIKE PROTEIN 11)	S.X.	H.G.	Please select
0.18	11.6	Zm.2966.1.S1_at	AI001347	hypothetical protein LOC100273775	-	8e-1	At1g01810	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.3	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM258176	Oh43 11-day seedling aerial tissue biological replicate 1	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
11.4	98.5	GSM258185	Oh43 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
10.7	98.5	GSM258194	Oh43 11-day seedling aerial tissue biological replicate 3	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
9.7	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM258189	Oh43xMo17 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
9.4	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.99	0	1972	Zm.2031.1.S1_at	AY103664.1	csu1120 protein	-	5e-4	At3g50550	unknown protein	C.G.	S.X.	Please select
0.99	0	1972	Zm.2031.1.A1_x_at	AY103664.1	csu1120 protein	-	5e-4	At3g50550	unknown protein	C.G.	S.X.	Please select
0.55	1e-178	624	Zm.2031.2.A1_a_at	BM072808	csu1120 protein /// metallothionein-like protein type 2	-	3e-4	At3g50550	unknown protein	C.G.	S.X.	Please select
0.41	4e-111	400	Zm.2031.4.A1_at	BM341698	metallothionein-like protein type 2	-	1e-1	At5g47550	cysteine protease inhibitor, putative / cystatin, putative	C.G.	S.X.	Please select
0.41	4e-111	400	Zm.2031.4.A1_x_at	BM341698	metallothionein-like protein type 2	-	1e-1	At5g47550	cysteine protease inhibitor, putative / cystatin, putative	C.G.	S.X.	Please select
0.09	2e-48	192	Zm.19140.1.A1_at	CO520881	phytoene synthase 1	-	1e-8	At5g17230	phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase	C.G.	S.X.	Please select
0.07	6e-39	161	Zm.3607.2.A1_at	CF637896	hypothetical protein LOC100273155	-	3e-3	At5g46800	BOU (A BOUT DE SOUFFLE)	C.G.	S.X.	Please select
0.09	2e-35	149	Zm.219.1.A1_at	CO531918	-	-	3e+0	At2g35730	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.24	2e-11	69	Zm.7712.1.A1_at	BQ539501	-	-	4e+0	At4g30097	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-4	46	Arabidopsis thaliana	At3g50550	824219	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	8e-4	46	Glycine max	GmaAffx.85644.1.A1_at	CA938743	-	-	6e-2	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	C.G.	S.X.	Please select
0.09	5e-18	91	Hordeum vulgare	Contig616_at	Contig616	-	-	4e+0	At3g19160	ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES)	C.G.	S.X.	Please select
0.09	5e-21	103	Oryza sativa	Os01g0974200	AF017365.1	-	RicMT (Metallothionein-like protein)	2e-2	At3g09390	MT2A (METALLOTHIONEIN 2A)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-2	42	Populus trichocarpa	PtpAffx.218716.1.S1_at	pmrna34438	hypothetical protein	-	1e+0	At5g20020	RAN2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.40	2e-130	466	Triticum aestivum	Ta.17856.2.S1_at	CA619561	-	-	3e-4	At3g50550	unknown protein	C.G.	S.X.	Please select
0.03	1e-5	50	Vitis vinifera	1621823_at	CF214240	hypothetical protein LOC100253216	-	4e+0	At5g66000	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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