Gene omics information

Query gene ID	Zm.2016.1.S1_at
Gene name	zinc finger, C3HC4 type family protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.1	Zm.2016.1.S1_at	AW566149	zinc finger, C3HC4 type family protein	-	2e+0	At5g51195	unknown protein	S.X.	H.G.	Please select
0.73	89.9	Zm.2810.1.S1_at	CK371548	calcitonin peptide-receptor component protein	-	7e-1	At1g18170	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	S.X.	H.G.	Please select
0.55	71.6	Zm.10479.1.S1_at	BQ486450	-	-	5e+0	At5g13990	ATEXO70C2 (exocyst subunit EXO70 family protein C2)	S.X.	H.G.	Please select
0.55	71.6	Zm.7620.1.A1_at	CF629426	hypothetical protein LOC100279978	-	2e-3	At2g24010	scpl23 (serine carboxypeptidase-like 23)	S.X.	H.G.	Please select
0.55	71.6	Zm.10534.1.A1_x_at	CO049306	receptor protein kinase CLAVATA1	-	2e+0	At2g36890	RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)	S.X.	H.G.	Please select
0.40	48.5	Zm.19350.1.A1_at	CO531475	yip1 domain family member 6	-	2e-18	At4g30260	integral membrane Yip1 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
37.6	99.9	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
25.9	99.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.4	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.3	99.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.3	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.7	99.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.2	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.1	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	8e-26	117	Zm.1911.1.A1_a_at	AY108229.1	hypothetical protein LOC100191691 /// hypothetical protein LOC100276993	-	1e+0	At5g46730	glycine-rich protein	C.G.	S.X.	Please select
0.37	8e-26	117	Zm.1911.1.A1_at	AY108229.1	hypothetical protein LOC100191691	-	1e+0	At5g46730	glycine-rich protein	C.G.	S.X.	Please select
0.02	6e-2	38	Zm.4597.1.A1_at	CO521659	ubiquitin-protein ligase	-	6e+0	At3g13445	TBP1 (TATA BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.12502.1.S1_at	CF349170	-	-	7e-83	At4g11380	beta-adaptin, putative	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.7006.2.A1_at	AW225324	hypothetical protein LOC100274348	-	5e-32	At5g35530	40S ribosomal protein S3 (RPS3C)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.6795.1.S1_at	CF632685	acid phosphatase	-	8e-1	At5g41430	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.6087.1.A1_at	BM382464	hypothetical protein LOC100193868 /// hypothetical protein LOC100277309	-	4e+0	At4g11760	LCR17 (Low-molecular-weight cysteine-rich 17)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.5599.1.A1_at	CF649483	O-methyltransferase ZRP4	-	7e-1	At1g51990	O-methyltransferase family 2 protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.19091.1.S1_at	CO526991	fiber protein Fb2	-	2e+0	At3g06820	mov34 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At5g51195	835194	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e-1	36	Glycine max	GmaAffx.91387.1.S1_s_at	CF807112	-	-	2e-26	At1g62750	SCO1 (SNOWY COTYLEDON 1)	C.G.	S.X.	Please select
0.03	3e-1	36	Hordeum vulgare	U43494_at	U43494	-	-	3e+0	At3g53490	unknown protein	C.G.	S.X.	Please select
0.06	8e-5	50	Oryza sativa	Os04g0487700	9632.m03908	-	Zn-finger, RING domain containing protein	2e+1	At5g37520	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.218491.1.S1_at	pmrna34134	hypothetical protein	-	8e+0	At3g56490	zinc-binding protein, putative / protein kinase C inhibitor, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	6e-1	36	Triticum aestivum	Ta.15553.1.S1_at	CA485445	-	-	4e+0	At1g76840	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1622530_at	BQ800497	hypothetical protein LOC100249036	-	9e-1	At4g19250	kelch repeat-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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