CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.1987.1.A1_a_at

Gene name superoxide dismutase3 /// Superoxide dismutase [Mn] 3.4, mitochondrial

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.0 Zm.1987.1.A1_a_at M33119.1 superoxide dismutase3 /// Superoxide dismutase [Mn] 3.4, mitochondrial - 1e-14 At3g10920 MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) S.X. H.G.
0.55 71.6 Zm.4151.1.A1_at CK145163 hypothetical protein LOC100276753 - 5e-4 At4g31410 unknown protein S.X. H.G.
0.30 29.8 Zm.13102.1.A1_at CK985772 - - 3e-3 At2g34070 unknown protein S.X. H.G.
0.19 12.8 Zm.1039.3.A1_x_at AI677375 Hypothetical protein LOC100194359 - 3e+0 At4g18580 unknown protein S.X. H.G.
0.19 12.8 Zm.4301.1.A1_at AW066833 hypothetical protein LOC100274567 - 2e+0 At1g44750 ATPUP11 S.X. H.G.
0.16 9.4 Zm.15680.1.A1_at CA405039 hypothetical protein LOC100277476 - 7e+0 At3g43153 cAMP-dependent protein kinase inhibitor-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.7 96.5 GSM162267 Mutant 1 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
4.3 96.1 GSM162266 Wild type 2 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
4.3 96.1 GSM162264 Mutant 2 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
3.6 95.2 GSM162265 Wild type 1 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
3.3 94.7 GSM202309 Mo17 19 day after pollination embryo tissue, biological replicate 1 GSE8179 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.2 94.5 GSM202310 B73 19 day after pollination embryo tissue, biological replicate 1 GSE8179 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.2 94.5 GSM202322 B73x Mo17 19 day after pollination embryo tissue, biological replicate 3 GSE8179 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.1 94.3 GSM202324 Mo17xB73 19 day after pollination embryo tissue, biological replicate 3 GSE8179 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.1 94.3 GSM202319 Mo17 19 day after pollination embryo tissue, biological replicate 3 GSE8179 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.1 94.3 GSM202318 B73xMo17 19 day after pollination embryo tissue, biological replicate 2 GSE8179 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e-1 36 Zm.11824.1.A1_at AY313903.1 yabby9 protein - 4e-12 At4g00180 YAB3 (YABBY3) C.G. S.X.
0.01 3e-1 36 Zm.10096.1.A1_at BM379421 adhesin FhaB - 5e-2 At1g12665 - C.G. S.X.
0.01 1e+0 34 Zm.7914.1.A1_at AY103800.1 hypothetical protein LOC100277669 - 5e-11 At3g21175 ZML1 (ZIM-LIKE 1) C.G. S.X.
0.01 1e+0 34 Zm.7914.1.A1_a_at AY103800.1 hypothetical protein LOC100277669 - 5e-11 At3g21175 ZML1 (ZIM-LIKE 1) C.G. S.X.
0.01 1e+0 34 Zm.6988.1.S1_at AI973474 glyceraldehyde phosphate dehydrogenase B1 - 3e-10 At1g42970 GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT) C.G. S.X.
0.01 1e+0 34 Zm.4035.1.A1_at AI834003 hypothetical protein LOC100279841 - 9e-4 At3g11110 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 1e+0 34 Zm.3360.1.S1_at AY107010.1 phosphoserine aminotransferase - 4e+0 At1g79170 unknown protein C.G. S.X.
0.01 1e+0 34 Zm.18898.1.A1_s_at CO530921 hypothetical protein LOC100279401 - 7e+0 At4g40045 unknown protein C.G. S.X.
0.01 1e+0 34 Zm.18898.1.A1_at CO530921 hypothetical protein LOC100279401 - 7e+0 At4g40045 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 1e-14 81 Arabidopsis thaliana At3g10920 820263 MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) manganese superoxide dismutase (MSD1) - - - C.G. S.X.
0.24 5e-15 83 Glycine max Gma.5576.1.S1_at CD417924 MnSOD - 7e-16 At3g10920 MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) C.G. S.X.
0.40 0 642 Hordeum vulgare Contig374_at Contig374 - - 1e-8 At3g56350 superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative C.G. S.X.
0.38 0 664 Oryza sativa Os05g0323900 AU173300 - Manganese-superoxide dismutase precursor (EC1.15.1.1) 3e-1 At5g55560 protein kinase family protein C.G. S.X.
0.17 3e-13 77 Populus trichocarpa PtpAffx.153242.1.S1_s_at CV264777 hypothetical protein - 6e-25 At3g10920 MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) C.G. S.X.
0.46 0 777 Triticum aestivum Ta.26380.1.A1_at CD490915 - - 3e-11 At3g56350 superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative C.G. S.X.
0.12 1e-27 123 Vitis vinifera 1617148_at CF204985.1 - - 4e-41 At3g10920 MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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