Gene omics information

Query gene ID	Zm.1974.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	76.1	Zm.1974.1.A1_at	CF920129	-	-	2e+1	At5g36100	unknown protein	S.X.	H.G.	Please select
0.73	89.9	Zm.13713.1.A1_at	AY106520.1	hypothetical protein LOC100193720	-	2e-24	At4g39200	40S ribosomal protein S25 (RPS25E)	S.X.	H.G.	Please select
0.67	85.8	Zm.12641.1.S1_at	BU097542	glucan endo-1,3-beta-glucosidase	-	9e-3	At3g55430	glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative	S.X.	H.G.	Please select
0.48	61.3	ZmAffx.56.1.A1_at	AI665062	hypothetical protein LOC100279590	-	1e+0	At5g08180	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	S.X.	H.G.	Please select
0.46	58.4	Zm.9361.1.A1_at	BM349541	-	-	5e+0	At4g09580	-	S.X.	H.G.	Please select
0.39	45.6	Zm.13479.1.A1_at	AY108945.1	inositol monophosphatase 3	-	6e-4	At3g02870	VTC4	S.X.	H.G.	Please select
0.37	42.3	Zm.13252.1.S1_at	U50816.1	-	-	6e-1	At4g34730	ribosome-binding factor A family protein	S.X.	H.G.	Please select
0.32	33.4	ZmAffx.1193.1.S1_at	BE025345	-	-	3e+0	At3g13140	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.28	28.1	Zm.18399.1.A1_at	CO534452	-	-	2e+0	At5g15560	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
43.2	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.5	99.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.9	99.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM253246	ZM_12h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
8.2	98.0	GSM253249	ZM_12h_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
7.3	97.8	GSM323171	Zm_SG200Dpep1_24hpi_II	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
6.6	97.6	GSM323170	Zm_SG200Dpep1_24hpi_I	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
6.1	97.4	GSM253245	ZM_12h_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
5.8	97.2	GSM253254	ZM_24h_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
5.4	97.0	GSM253253	ZM_24h_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.71	1e-128	458	Zm.18590.1.A1_at	AW562614	exostosin-like	-	1e+0	At5g22930	unknown protein	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.2577.1.S1_at	AY104127.1	protein transporter	-	2e-11	At5g16880	VHS domain-containing protein / GAT domain-containing protein	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.1010.1.A1_at	U85495.1	LON2 protein	-	4e-20	At5g26860	LON1 (LON PROTEASE 1)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.6964.1.S1_at	AI665995	-	-	6e-2	At4g22320	unknown protein	C.G.	S.X.	Please select
0.01	8e+0	30	Zm.6518.1.S1_at	AW927338	plastid-lipid-associated protein 2	-	2e-4	At4g04020	FIB (FIBRILLIN)	C.G.	S.X.	Please select
0.02	8e+0	30	Zm.6474.2.S1_a_at	CA402315	dephospho-CoA kinase	-	2e+0	At5g03980	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.03	8e+0	30	Zm.5770.2.S1_a_at	BG265985	protein disulfide isomerase	-	4e+0	At3g05490	RALFL22 (ralf-like 22)	C.G.	S.X.	Please select
0.01	8e+0	30	Zm.5646.2.A1_x_at	AW257823	hypothetical protein LOC100191650	-	3e-41	At1g04750	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)	C.G.	S.X.	Please select
0.02	8e+0	30	Zm.4716.1.A1_at	AI738149	hypothetical protein LOC100193057	-	1e-1	At4g37750	ANT (AINTEGUMENTA)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+1	30	Arabidopsis thaliana	At5g36100	833606	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.87268.2.S1_at	BM308386	-	-	3e-15	At5g26860	LON1 (LON PROTEASE 1)	C.G.	S.X.	Please select
0.03	9e+0	30	Hordeum vulgare	HW04H17u_s_at	HW04H17u	-	-	2e-1	At5g63740	zinc finger protein-related	C.G.	S.X.	Please select
0.12	2e-38	161	Oryza sativa	Os01g0921300	AK119614.1	-	Exostosin-like family protein	2e-7	At1g67410	exostosin family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e+0	34	Populus trichocarpa	PtpAffx.209430.1.S1_at	pmrna18672	hypothetical protein	-	2e+0	At1g55265	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	3e-35	149	Triticum aestivum	Ta.26909.1.S1_at	CD452934	-	-	1e-4	At3g45400	exostosin family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1616163_at	CF371751	hypothetical protein LOC100263636	-	4e+0	At3g52440	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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