Gene omics information

Query gene ID	Zm.1960.1.A1_at
Gene name	palmitoyltransferase swf1
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	55.7	Zm.1960.1.A1_at	AW566154	palmitoyltransferase swf1	-	4e-1	At3g04970	zinc finger (DHHC type) family protein	S.X.	H.G.	Please select
0.73	89.9	Zm.15437.1.S1_at	CD219447	hypothetical protein LOC100191830	-	6e+0	At5g37670	15.7 kDa class I-related small heat shock protein-like (HSP15.7-CI)	S.X.	H.G.	Please select
0.73	89.9	ZmAffx.834.1.A1_at	AI770566	-	-	8e-1	At1g54420	unknown protein	S.X.	H.G.	Please select
0.71	88.2	ZmAffx.757.1.A1_at	AI745972	-	-	3e+0	At4g32960	unknown protein	S.X.	H.G.	Please select
0.46	58.4	Zm.1342.1.S1_at	BG842254	-	-	4e-5	At1g23230	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.13366.1.A1_a_at	CF634270	-	-	3e-1	At3g45960	ATEXLA3 (arabidopsis thaliana expansin-like a3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.4	99.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3	91.7	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-1	36	Zm.19066.1.S1_at	CD975063	-	-	1e-37	At2g02000	GAD3 (glutamate decarboxylase 3)	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.15057.1.S1_at	BM337751	hypothetical protein LOC100277048	-	2e+0	At5g03660	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.11378.1.A1_at	CB351158	hypothetical protein LOC100272914	-	6e-1	At5g06610	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.9499.1.A1_at	BM332246	-	-	5e+0	At5g56990	-	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.813.2.A1_at	AY103619.1	-	-	5e-15	At4g14160	transport protein, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.6634.1.A1_at	AI629925	-	-	3e-2	At2g33720	transcription factor	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.1616.1.A1_at	BM380022	plasma membrane-bound peroxidase 3-1	-	6e-2	At1g14540	anionic peroxidase, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.11926.1.A1_at	BM381899	hypothetical protein LOC100277635	-	1e+0	At1g71450	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.03	1e+1	30	ZmAffx.1055.1.A1_at	AI881878	-	-	5e-2	At4g01940	NFU1	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	4e-1	36	Arabidopsis thaliana	At3g04970	819657	zinc finger (DHHC type) family protein	F:zinc ion binding;P:biological_process unknown;C:endomembrane system;MOFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.58273.1.S1_at	BE608334	-	-	4e-10	At2g45750	dehydration-responsive family protein	C.G.	S.X.	Please select
0.03	8e-1	34	Hordeum vulgare	Contig10812_at	Contig10812	-	-	2e+0	At1g54410	dehydrin family protein	C.G.	S.X.	Please select
0.33	5e-70	266	Oryza sativa	Os03g0363900	AK066313.1	-	Zn-finger, DHHC type domain containing protein	2e-4	At3g04970	zinc finger (DHHC type) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	2e-4	48	Populus trichocarpa	PtpAffx.222747.1.S1_at	pmrna40370	hypothetical protein	-	2e-31	At3g04970	zinc finger (DHHC type) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	2e-9	63	Triticum aestivum	TaAffx.86300.1.S1_at	CA611715	-	-	5e+0	At3g11860	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Vitis vinifera	1615847_at	CF373669	similar to SIGB (SIGMA FACTOR B); DNA binding / DNA-directed RNA polymerase/ transcription factor	-	5e-15	At1g08540	SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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