Gene omics information

Query gene ID	Zm.1937.1.S1_at
Gene name	hypothetical protein LOC100277662
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.1937.1.S1_at	CN845484	hypothetical protein LOC100277662	-	5e+0	At3g50800	unknown protein	S.X.	H.G.	Please select
0.83	95.6	Zm.3613.1.A1_at	BG841007	hypothetical protein LOC100273532	-	4e-24	At5g10540	peptidase M3 family protein / thimet oligopeptidase family protein	S.X.	H.G.	Please select
0.71	88.2	Zm.10105.1.A1_at	BM379807	-	-	5e+0	At4g11870	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.564.1.S1_a_at	AF244704.1	glutathione S-transferase GST 39	-	3e-2	At2g36640	ATECP63 (EMBRYONIC CELL PROTEIN 63)	S.X.	H.G.	Please select
0.61	79.5	Zm.4164.4.A1_a_at	BM267227	-	-	3e+1	At5g53180	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	S.X.	H.G.	Please select
0.60	77.8	Zm.4467.1.S1_a_at	AW054142	hypothetical protein LOC100193777	-	1e-5	At1g36280	adenylosuccinate lyase, putative / adenylosuccinase, putative	S.X.	H.G.	Please select
0.60	77.8	Zm.17556.1.S1_at	CK369094	hypothetical protein LOC100191272	-	1e-4	At5g36700	PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
36.1	99.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.5	99.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.4	99.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.5	97.5	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.2	97.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.52	3e-98	357	Zm.13844.1.A1_at	AY104009.1	hypothetical protein LOC100276510	-	4e+0	At4g27890	nuclear movement family protein	C.G.	S.X.	Please select
0.23	9e-12	69	Zm.1360.1.S1_x_at	AW927383	hypothetical protein LOC100276510	-	6e-1	At4g27890	nuclear movement family protein	C.G.	S.X.	Please select
0.23	9e-12	69	Zm.1360.1.S1_at	AW927383	hypothetical protein LOC100276510	-	6e-1	At4g27890	nuclear movement family protein	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.9757.1.A1_at	BM338070	-	-	5e-3	At1g73150	GTE3 (GLOBAL TRANSCRIPTION FACTOR GROUP E 3)	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.14702.1.A1_at	CF628124	Ribosomal protein S11	-	1e+0	At5g46730	glycine-rich protein	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.8743.1.A1_at	BM347268	blue copper protein	-	1e-1	At1g72230	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.5915.1.S1_at	AW067416	hypothetical protein LOC100272832	-	3e+0	At5g40690	-	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.5480.1.A1_at	AY103756.1	glycine-rich RNA-binding protein 7	-	5e-1	At2g46000	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.9093.1.A1_at	BM347951	hypothetical protein LOC100277209	-	6e+0	At2g21900	WRKY59	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At3g50800	824244	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	HgAffx.8342.1.S1_at	CB380159	-	-	1e+0	At5g65180	-	C.G.	S.X.	Please select
0.20	6e-35	147	Hordeum vulgare	Contig17649_at	Contig17649	-	-	7e+0	At4g32320	APX6	C.G.	S.X.	Please select
0.28	8e-25	115	Oryza sativa	Os.50326.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e-3	42	Populus trichocarpa	PtpAffx.141732.1.S1_s_at	BP928592	hypothetical protein	-	6e-9	At2g35230	VQ motif-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.23	1e-31	137	Triticum aestivum	TaAffx.114422.1.S1_at	CA646541	-	-	5e+0	At5g09960	unknown protein	C.G.	S.X.	Please select
0.04	4e-1	34	Vitis vinifera	1618674_at	CA812358	hypothetical protein LOC100256861	-	1e+0	At5g14105	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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