CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.19356.1.A1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 81.1 Zm.19356.1.A1_at CO533600 - - 5e+0 At3g27590 unknown protein S.X. H.G.
0.67 85.8 Zm.18486.1.A1_at AW461085 hypothetical protein LOC100276684 - 1e-1 At2g47760 ALG3 S.X. H.G.
0.56 74.4 Zm.19062.1.S1_at CO531568 glycine-rich RNA-binding protein 2 - 6e+0 At5g51040 unknown protein S.X. H.G.
0.50 65.7 Zm.5767.1.A1_at AI714844 hypothetical protein LOC100273619 - 8e-2 At3g53850 - S.X. H.G.
0.44 55.7 Zm.549.1.A1_at AF244686.1 glutathione S-transferase GST 21 - 2e+0 At2g09840 - S.X. H.G.
0.38 44.2 Zm.6778.2.S1_at AI770701 - - 8e-4 At4g27230 HTA2 (histone H2A) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.1 99.2 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.5 99.0 GSM206303 Upper pulvinus 30 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
15.8 99.0 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3 98.9 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1 98.9 GSM206328 Upper pulvinus 60 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
14.5 98.9 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6 98.7 GSM206309 Lower pulvinus 30 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
11.9 98.6 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2 98.5 GSM206316 Upper pulvinus 60 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
10.5 98.4 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 8e-3 40 Zm.4583.1.A1_at AI737217 hypothetical protein LOC100280399 - 1e-6 At5g37780 CAM1 (CALMODULIN 1) C.G. S.X.
0.02 3e-2 38 Zm.9879.2.S1_at CA404875 vignain - 5e-5 At4g35350 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) C.G. S.X.
0.05 3e-2 38 Zm.12612.1.A1_at BU050513 - - 6e-1 At1g23260 MMZ1 (MMS ZWEI HOMOLOGUE 1) C.G. S.X.
0.02 1e-1 36 Zm.18529.1.S1_at CO522177 Hypothetical protein LOC100216826 - 5e-11 At4g02730 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.02 5e-1 34 Zm.8215.1.A1_at CO532014 anther-specific proline-rich protein APG - 8e-4 At4g30140 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.01 5e-1 34 Zm.8141.1.A1_at AY108955.1 hypothetical protein LOC100191434 - 4e+0 At4g35985 senescence/dehydration-associated protein-related C.G. S.X.
0.03 5e-1 34 Zm.7117.1.A1_a_at AY104703.1 hypothetical protein LOC100273279 /// remorin - 5e+0 At5g28630 glycine-rich protein C.G. S.X.
0.03 5e-1 34 Zm.7117.1.A1_at AY104703.1 - - 5e+0 At5g28630 glycine-rich protein C.G. S.X.
0.03 5e-1 34 Zm.7117.1.S1_at AY104703.1 - - 5e+0 At5g28630 glycine-rich protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e+0 32 Arabidopsis thaliana At3g27590 822381 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P - - - C.G. S.X.
0.05 2e+0 34 Glycine max HgAffx.13234.1.S1_at CB374748 - - 3e+0 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) C.G. S.X.
0.04 1e-1 36 Hordeum vulgare HZ42B13r_at HZ42B13r - - 9e-1 At4g14320 60S ribosomal protein L36a/L44 (RPL36aB) C.G. S.X.
0.06 3e-18 93 Oryza sativa Os01g0706900 AK105646.1 - Auxin conjugate hydrolase (ILL5) 2e-1 At1g51760 IAR3 (IAA-ALANINE RESISTANT 3) C.G. S.X.
0.04 2e+0 34 Populus trichocarpa PtpAffx.221529.1.S1_at pmrna38460 hypothetical protein - 3e+0 At5g40770 ATPHB3 (PROHIBITIN 3) C.G. S.X.
0.05 8e-2 38 Triticum aestivum TaAffx.106225.1.S1_at CA722935 - - 3e+0 At2g20825 ULT2 (ULTRAPETALA 2) C.G. S.X.
0.04 2e-2 38 Vitis vinifera 1610294_at CF373126 - - 4e-13 At4g25835 AAA-type ATPase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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