Gene omics information

Query gene ID	Zm.19355.1.A1_at
Gene name	STIP1 homology and U box-containing protein 1
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	75.1	Zm.19355.1.A1_at	BG549786	STIP1 homology and U box-containing protein 1	-	2e+0	At3g14820	carboxylesterase/ hydrolase, acting on ester bonds / lipase	S.X.	H.G.	Please select
0.67	85.8	Zm.8865.1.A1_at	BM267927	hypothetical protein LOC100191271	-	3e-9	At5g35460	unknown protein	S.X.	H.G.	Please select
0.54	69.8	Zm.13856.1.S1_at	AF439727.1	formate tetrahyrofolate ligase	-	9e-58	At1g50480	THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE)	S.X.	H.G.	Please select
0.54	69.8	Zm.17628.1.S1_at	CN845468	-	-	6e-17	At2g34560	katanin, putative	S.X.	H.G.	Please select
0.48	61.3	Zm.4304.1.S1_at	AI834719	-	-	1e-3	At3g18600	DEAD/DEAH box helicase, putative	S.X.	H.G.	Please select
0.48	61.3	Zm.5273.1.A1_at	BM497669	hypothetical protein LOC100272886	-	7e-1	At2g39990	EIF2	S.X.	H.G.	Please select
0.45	56.4	Zm.38.1.S1_at	M60215.1	ser/thr protein phosphatase1	-	1e-12	At2g29400	TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1)	S.X.	H.G.	Please select
0.44	55.7	Zm.17366.1.S1_s_at	CK371241	-	-	1e+1	At5g20060	phospholipase/carboxylesterase family protein	S.X.	H.G.	Please select
0.43	52.8	Zm.7938.1.A1_at	BM079591	glycosyltransferase	-	7e+0	At5g42567	-	S.X.	H.G.	Please select
0.33	36.0	Zm.6863.2.A1_at	CF637783	hypothetical protein LOC100193970	-	7e-67	At1g48410	AGO1 (ARGONAUTE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.7	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.8	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.4	99.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.4	99.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.4	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.6	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.8	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.2	99.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.0	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-2	40	Zm.897.1.A1_at	CD436499	-	-	7e-1	At5g03995	unknown protein	C.G.	S.X.	Please select
0.02	5e-2	38	Zm.16475.2.S1_at	CK371021	-	-	2e-7	At2g30260	U2B'' (U2 small nuclear ribonucleoprotein B)	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.15063.1.S1_at	BM269328	polyol transporter protein 4	-	3e+0	At2g40570	initiator tRNA phosphoribosyl transferase family protein	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.5476.2.S1_at	CF016143	IQ calmodulin-binding motif family protein	-	2e-1	At1g29060	-	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.1663.1.A1_at	AW574480	VQ motif family protein	-	3e+0	At3g04600	tRNA synthetase class I (W and Y) family protein	C.G.	S.X.	Please select
0.02	3e+0	32	ZmAffx.572.1.A1_at	AI714689	-	-	1e+1	At5g02090	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.19139.1.A1_at	CF018101	3,4-dihydroxy-2-butanone kinase	-	1e-7	At1g48430	dihydroxyacetone kinase family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.15685.1.A1_at	CF628027	-	-	2e-1	At4g14020	rapid alkalinization factor (RALF) family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.15326.1.A1_at	CK369130	galactosyltransferase family	-	2e-7	At1g74800	galactosyltransferase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At3g14820	820711	carboxylesterase/ hydrolase, acting on ester bonds / lipase	F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-1	36	Glycine max	HgAffx.20059.1.S1_at	CA939121	-	-	9e-1	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please select
0.03	4e+0	32	Hordeum vulgare	Contig20504_at	Contig20504	-	-	4e+0	At5g38360	catalytic	C.G.	S.X.	Please select
0.23	6e-33	143	Oryza sativa	Os05g0104900	AK069824.1	-	Carboxy terminus of Hsp70-interacting protein	3e+0	At5g28030	cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+1	32	Populus trichocarpa	PtpAffx.32921.1.S1_at	BI126573	-	-	3e-1	At5g50100	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	8e+0	32	Triticum aestivum	TaAffx.78870.1.S1_at	CA725514	-	-	2e-1	At4g26370	antitermination NusB domain-containing protein	C.G.	S.X.	Please select
0.03	6e-1	34	Vitis vinifera	1613864_at	CF568888	-	-	1e+0	At5g61770	PPAN (PETER PAN-LIKE PROTEIN)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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