Gene omics information

Query gene ID	Zm.19318.1.S1_at
Gene name	CMO protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.58	75.1	Zm.19318.1.S1_at	CO532290	CMO protein	-	8e-1	At4g29890	choline monooxygenase, putative (CMO-like)	S.X.	H.G.	Please select
0.67	85.8	Zm.11893.1.A1_at	AY107653.1	hypothetical protein LOC100273477	-	5e+0	At3g49470	NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)	S.X.	H.G.	Please select
0.60	77.8	Zm.14898.1.A1_at	BM351319	hypothetical protein LOC100193737	-	4e+0	At3g43800	ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)	S.X.	H.G.	Please select
0.60	77.8	Zm.13146.1.A1_at	AY106044.1	hypothetical protein LOC100272292	-	1e-2	At2g30920	ATCOQ3 (ARABDIOPSIS THALIANA COENZYME Q 3)	S.X.	H.G.	Please select
0.59	76.1	Zm.9383.1.A1_at	BM268466	-	-	8e+0	At3g44935	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.79.1.S1_at	BM416702	beta 2 tubulin (AA 1-444)	-	8e-137	At5g62690	TUB2	S.X.	H.G.	Please select
0.44	55.7	Zm.19047.1.S1_at	CO520935	hypothetical protein LOC100275653	-	9e-1	At2g47900	AtTLP3 (TUBBY LIKE PROTEIN 3)	S.X.	H.G.	Please select
0.40	48.5	Zm.12069.3.A1_x_at	CF631890	hypothetical protein LOC100193270	-	1e+1	At5g36900	unknown protein	S.X.	H.G.	Please select
0.38	44.2	Zm.18516.1.A1_a_at	CO526437	-	-	2e+0	At5g55570	unknown protein	S.X.	H.G.	Please select
0.37	42.3	Zm.12598.1.S1_at	BU037415	-	-	1e+0	At2g30933	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.6	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.9	99.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.3	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.2	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.2	99.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.6	99.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e+0	34	Zm.5327.1.A1_at	CF041705	hypothetical protein LOC100194093	-	8e+0	At4g14358	-	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.4575.1.A1_at	AI737153	anaphase-promoting complex subunit 11	-	3e-14	At3g05870	APC11	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.18144.1.S1_at	CF045756	prolyl 4-hydroxylase alpha-2 subunit	-	9e-22	At1g20270	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.13341.1.S1_at	CF044863	hypothetical protein LOC100191832	-	5e-1	At1g27950	LTPG1 (GLYCOSYLPHOSPHATIDYLINOSITOL-ANCHORED LIPID PROTEIN TRANSFER 1)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.11729.1.A1_at	CF635461	hypothetical protein LOC100273566	-	2e-19	At2g22230	beta-hydroxyacyl-ACP dehydratase, putative	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.6418.1.S1_at	AY108322.1	hypothetical protein LOC100216693	-	2e-1	At3g44580	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.4510.1.A1_a_at	CF636202	hypothetical protein LOC100277304	-	6e-1	At5g24879	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	32	Zm.4051.1.A1_at	CB350632	protein SUR2	-	1e-27	At1g69640	SBH1 (SPHINGOID BASE HYDROXYLASE 1)	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.2723.1.A1_at	AW066969	hypothetical protein LOC100272708	-	5e-1	At5g28800	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	8e-1	36	Arabidopsis thaliana	At4g29890	829111	choline monooxygenase, putative (CMO-like)	F:electron carrier activity, oxidoreductase activity, iron ion binding, 2 iron, 2 sulfur cluster binding;P:oxidation reduction, cellular aromatic compound metabolic process;C:chloroplast;BOFPMA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	3e-10	67	Glycine max	GmaAffx.48554.3.S1_at	AW508747	-	-	4e-1	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.03	2e+0	34	Hordeum vulgare	Contig15584_at	Contig15584	-	-	1e-4	At3g23480	cyclopropane fatty acid synthase-related	C.G.	S.X.	Please select
0.62	0	944	Oryza sativa	Os.27712.2.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	5e-9	63	Populus trichocarpa	PtpAffx.206176.1.S1_at	pmrna12263	hypothetical protein	-	1e-17	At4g29890	choline monooxygenase, putative (CMO-like)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	3e+0	34	Triticum aestivum	TaAffx.12433.1.A1_at	BJ263972	-	-	9e-1	At4g01190	ATPIPK10 (Arabidopsis phosphatidylinositol phosphate kinase 10)	C.G.	S.X.	Please select
0.05	2e-8	59	Vitis vinifera	1621162_at	CF569220.1	-	-	3e-17	At4g29890	choline monooxygenase, putative (CMO-like)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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