Gene omics information

Query gene ID	Zm.19316.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.69	86.5	Zm.19316.1.A1_at	CO523375	-	-	1e+0	At3g05860	MADS-box protein (AGL45)	S.X.	H.G.	Please select
0.51	66.4	Zm.948.1.A1_at	BF728775	-	-	3e+0	At4g03620	myosin heavy chain-related	S.X.	H.G.	Please select
0.43	52.8	Zm.15800.5.A1_a_at	CA404204	-	-	1e-5	At4g13780	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative	S.X.	H.G.	Please select
0.40	48.5	Zm.3106.1.S1_s_at	CD944097	-	-	1e-1	At4g24960	ATHVA22D	S.X.	H.G.	Please select
0.39	45.6	Zm.17338.2.A1_at	CK826762	-	-	4e+0	At5g27820	ribosomal protein L18 family protein	S.X.	H.G.	Please select
0.36	41.3	Zm.687.1.A1_at	BM080576	PL3K2	-	2e-1	At1g24520	BCP1	S.X.	H.G.	Please select
0.34	37.2	Zm.1973.1.S1_at	AY108179.1	hypothetical protein LOC100217077	-	5e-5	At1g12680	PEPKR2 (Phosphoenolpyruvate carboxylase-related kinase 2)	S.X.	H.G.	Please select
0.34	37.2	ZmAffx.1092.1.A1_at	AW066155	-	-	1e-107	Atcg00490	-	S.X.	H.G.	Please select
0.34	37.2	Zm.7685.1.A1_x_at	CK369531	hypothetical protein LOC100278578	-	2e+0	At3g28680	prolylcarboxypeptidase-related	S.X.	H.G.	Please select
0.33	36.0	Zm.4406.2.A1_at	AI881215	-	-	8e-4	At1g34790	TT1 (transparent testa 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
42.7	99.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
35.3	99.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.7	99.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.1	99.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.9	99.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.70	1e-156	551	Zm.16267.1.A1_at	CF244199	-	-	1e+0	At5g05330	DNA binding	C.G.	S.X.	Please select
0.01	1e-1	36	Zm.2799.1.S1_at	CF244455	-	-	2e-5	At3g16480	MPPalpha (mitochondrial processing peptidase alpha subunit)	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.5017.1.S1_at	BM072931	dynamin-related protein 1C	-	5e-46	At1g14830	ADL1C (ARABIDOPSIS DYNAMIN-LIKE PROTEIN 1C)	C.G.	S.X.	Please select
0.04	6e-1	34	Zm.2012.1.S1_at	AW566063	-	-	8e+0	At5g23220	NIC3 (NICOTINAMIDASE 3)	C.G.	S.X.	Please select
0.01	2e+0	32	ZmAffx.1454.1.S1_at	11990232-21	-	-	0	Atcg00340	-	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.9200.1.A1_at	BM336786	-	-	4e+0	At3g45600	TET3 (TETRASPANIN3)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.9079.1.A1_at	CN844993	hypothetical protein LOC100217287	-	6e-3	At1g13890	SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.8707.1.A1_at	BM333131	hypothetical protein LOC100272998	-	5e-5	At4g29590	methyltransferase	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.3858.1.A1_at	AW065813	-	-	6e-7	At3g56210	binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At3g05860	819755	MADS-box protein (AGL45)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e+0	34	Glycine max	GmaAffx.59223.1.S1_at	BG654040	-	-	1e+1	Atcg01070	-	C.G.	S.X.	Please select
0.31	1e-8	59	Hordeum vulgare	Contig8352_at	Contig8352	-	-	3e-1	At1g11900	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.18	6e-32	139	Oryza sativa	Os01g0966300	AK073175.1	-	Mitochondrial processing peptidase	2e-4	At1g51980	mitochondrial processing peptidase alpha subunit, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	7e+0	32	Populus trichocarpa	PtpAffx.205096.1.S1_at	pmrna10096	hypothetical protein	-	6e+0	At5g55870	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.13	2e-5	50	Triticum aestivum	TaAffx.5823.1.S1_at	CA737292	-	-	1e-1	At1g51980	mitochondrial processing peptidase alpha subunit, putative	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1611908_at	CF405248	hypothetical protein LOC100245921	-	2e+1	At5g06510	NF-YA10 (NUCLEAR FACTOR Y, SUBUNIT A10)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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