Gene omics information

Query gene ID	Zm.19306.1.A1_at
Gene name	hypothetical protein LOC100193355
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.19306.1.A1_at	AI664819	hypothetical protein LOC100193355	-	6e-1	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	S.X.	H.G.	Please select
0.80	94.0	Zm.5922.1.A1_at	CN844887	DNA-binding protein S1FA2	-	2e+0	At1g16250	kelch repeat-containing F-box family protein	S.X.	H.G.	Please select
0.77	92.1	Zm.810.1.S1_at	CF006379	-	-	6e-69	At5g45550	mob1/phocein family protein	S.X.	H.G.	Please select
0.73	89.9	Zm.2330.1.S1_at	BE552610	-	-	4e-15	At2g42120	POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT)	S.X.	H.G.	Please select
0.67	85.8	Zm.3808.1.S1_at	CF010880	low-molecular-weight cysteine-rich protein LCR68	-	5e+0	At4g02850	phenazine biosynthesis PhzC/PhzF family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.13427.1.S1_at	AF124738.1	hypothetical protein LOC100194389	-	1e-7	At4g21520	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.1	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.8	95.5	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-2	40	Zm.2695.1.S1_at	CN844861	hypothetical protein LOC100279628	-	1e-12	At2g44530	ribose-phosphate pyrophosphokinase, putative / phosphoribosyl diphosphate synthetase, putative	C.G.	S.X.	Please select
0.01	2e-2	40	Zm.10170.1.A1_at	CF648707	hypothetical protein LOC100194222	-	3e-12	At5g56140	KH domain-containing protein	C.G.	S.X.	Please select
0.02	7e-2	38	Zm.6207.4.A1_at	BQ538453	Hypothetical protein LOC100194345	-	6e-19	At2g04390	40S ribosomal protein S17 (RPS17A)	C.G.	S.X.	Please select
0.02	7e-2	38	Zm.5875.1.A1_at	CA402986	hypothetical protein LOC100193662	-	7e+0	At3g15640	cytochrome c oxidase family protein	C.G.	S.X.	Please select
0.01	7e-2	38	Zm.52.1.A1_at	AB021175.1	root cap protein 1	-	2e+0	At5g60520	late embryogenesis abundant protein-related / LEA protein-related	C.G.	S.X.	Please select
0.01	7e-2	38	Zm.18570.1.S1_at	CO518308	hypothetical protein LOC100193943 /// hypothetical protein LOC100276686	-	3e+0	At4g08895	inorganic phosphate transporter family protein	C.G.	S.X.	Please select
0.02	7e-2	38	Zm.14463.1.A1_at	BM336602	hypothetical protein LOC100194081	-	2e+0	At4g22380	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	C.G.	S.X.	Please select
0.02	3e-1	36	ZmAffx.855.1.S1_at	AI770678	-	-	1e+1	At5g23035	-	C.G.	S.X.	Please select
0.02	3e-1	36	ZmAffx.855.1.A1_at	AI770678	-	-	1e+1	At5g23035	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	36	Arabidopsis thaliana	At4g13720	827006	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	F:hydrolase activity, pyrophosphatase activity;P:biological_process unknown;C:unknown;BOAMFPV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	9e-1	36	Glycine max	PsAffx.psHB026xK08f_at	PsAffx.psHB026xK08f	-	-	1e+0	At5g14330	unknown protein	C.G.	S.X.	Please select
0.02	2e-2	40	Hordeum vulgare	Contig1031_at	Contig1031	-	-	1e-14	At1g18080	ATARCA	C.G.	S.X.	Please select
0.33	3e-41	171	Oryza sativa	Os01g0112100	AK100946.1	-	-	2e+0	At3g13235	ubiquitin family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	4e+0	34	Populus trichocarpa	PtpAffx.85962.1.S1_at	BU814383	-	-	8e-2	At5g09510	40S ribosomal protein S15 (RPS15D)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	5e-11	69	Triticum aestivum	TaAffx.132800.1.S1_at	BE427088	-	-	3e+0	At3g20080	CYP705A15	C.G.	S.X.	Please select
0.03	3e+0	32	Vitis vinifera	1616577_at	BQ792277	hypothetical protein LOC100261345	-	6e+0	At3g54620	BZIP25 (BASIC LEUCINE ZIPPER 25)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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