Gene omics information

Query gene ID	Zm.19284.1.A1_at
Gene name	hypothetical protein LOC100274557
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.72	88.6	Zm.19284.1.A1_at	CO524123	hypothetical protein LOC100274557	-	2e-1	At3g51010	unknown protein	S.X.	H.G.	Please select
0.57	75.1	Zm.2520.1.A1_at	AW400289	hypothetical protein LOC100191754	-	5e-21	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	S.X.	H.G.	Please select
0.57	75.1	Zm.1961.1.A1_at	BM379423	Glutathione S-transferase12	-	2e+0	At4g26620	sucrase-related	S.X.	H.G.	Please select
0.57	75.1	Zm.19172.1.A1_at	CO528850	hypothetical protein LOC100274312	-	7e-3	At1g55740	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	S.X.	H.G.	Please select
0.56	74.4	Zm.5373.1.S1_at	BF728005	hypothetical protein LOC100276438	-	1e+0	At5g26170	WRKY50	S.X.	H.G.	Please select
0.55	71.6	Zm.16525.3.A1_x_at	AI738309	deoxy xylulose synthase 2	-	7e-44	At5g56010	HSP81-3	S.X.	H.G.	Please select
0.53	69.1	Zm.5608.1.A1_at	AY107668.1	-	-	8e+0	At4g17650	aromatic-rich family protein	S.X.	H.G.	Please select
0.44	55.7	Zm.4044.1.A1_a_at	AY109936.1	hypothetical protein LOC100273897 /// hypothetical protein LOC100274738	-	5e+0	At5g13780	GCN5-related N-acetyltransferase, putative	S.X.	H.G.	Please select
0.40	48.5	Zm.13032.1.A1_at	AY107007.1	-	-	2e+0	At1g68907	-	S.X.	H.G.	Please select
0.30	29.8	Zm.8367.1.A1_at	BM073854	-	-	5e+0	At3g57810	OTU-like cysteine protease family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.8	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.9	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.9	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.4	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.0	99.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.3	99.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.6	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.3	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e-3	40	Zm.9532.1.A1_at	CF649570	hypothetical protein LOC100273362	-	2e+0	At5g43410	ethylene-responsive factor, putative	C.G.	S.X.	Please select
0.02	4e-1	34	Zm.13666.1.A1_at	AW055570	hypothetical protein LOC100273665	-	2e-4	At2g27480	calcium ion binding	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.3006.1.A1_a_at	BG873873	-	-	2e-2	At3g21352	unknown protein	C.G.	S.X.	Please select
0.03	7e+0	30	ZmAffx.1527.1.S1_at	40794996-123	-	-	8e-1	At3g13710	PRA1.F4 (PRENYLATED RAB ACCEPTOR 1.F4)	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.9919.1.A1_at	CO517763	hypothetical protein LOC100217041	-	2e+0	At4g36720	HVA22K (HVA22-LIKE PROTEIN K)	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.5118.1.A1_at	CF636912	peptidyl-tRNA hydrolase 2	-	3e-21	At3g03010	aminoacyl-tRNA hydrolase	C.G.	S.X.	Please select
0.03	7e+0	30	Zm.2764.1.S1_at	AW067132	-	-	5e+0	At3g22950	ATARFC1 (ADP-ribosylation factor C1)	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.18775.1.A1_at	BM074499	calcium/calmodulin dependent protein kinase-like	-	2e+0	At1g07950	surfeit locus protein 5 family protein / SURF5 family protein	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.17238.1.S1_at	CK371539	-	-	3e-2	At3g02300	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	36	Arabidopsis thaliana	At3g51010	824265	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	9e-2	38	Glycine max	HgAffx.6006.1.S1_at	CB826205	-	-	4e+0	At5g51830	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	HVSMEk0022L04r2_s_at	HVSMEk0022L04r2	-	-	9e-1	At2g28800	ALB3 (ALBINO 3)	C.G.	S.X.	Please select
0.16	3e-39	163	Oryza sativa	Os01g0506100	AK102377.1	-	Protein prenyltransferase domain containingprotein	7e-2	At2g36010	E2F3 (E2F TRANSCRIPTION FACTOR 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	9e-2	38	Populus trichocarpa	Ptp.2334.1.A1_at	CV248937	-	-	1e+0	At1g17410	nucleoside diphosphate kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e-2	40	Triticum aestivum	Ta.26615.1.A1_at	CD491365	-	-	1e-3	At5g35790	G6PD1 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 1)	C.G.	S.X.	Please select
0.03	3e-1	34	Vitis vinifera	1617608_at	CD007537	-	-	5e+0	At5g59300	UBC7 (UBIQUITIN CARRIER PROTEIN 7)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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