Gene omics information

Query gene ID	Zm.19280.1.S1_at
Gene name	hypothetical protein LOC100276261
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.19280.1.S1_at	CO524637	hypothetical protein LOC100276261	-	4e-6	At5g39660	CDF2 (CYCLING DOF FACTOR 2)	S.X.	H.G.	Please select
0.60	77.8	Zm.482.1.S1_at	AF073488.1	bifunctional dihydrofolate reductase-thymidylate synthase	-	1e-50	At2g16370	THY-1 (THYMIDYLATE SYNTHASE 1)	S.X.	H.G.	Please select
0.43	52.8	Zm.9635.1.A1_at	BM334297	-	-	2e+1	At5g55940	emb2731 (embryo defective 2731)	S.X.	H.G.	Please select
0.40	48.5	Zm.12546.2.A1_a_at	AI770557	ATP binding protein	-	3e+0	At5g56150	UBC30 (ubiquitin-conjugating enzyme 30)	S.X.	H.G.	Please select
0.31	31.6	Zm.15697.1.A1_at	CD441154	hypothetical protein LOC100191504	-	3e-2	At5g63150	unknown protein	S.X.	H.G.	Please select
0.25	21.3	Zm.17780.1.S1_at	CK370645	hypothetical protein LOC100276040	-	4e+0	At2g22460	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.7	98.6	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM253270	ZM_4.5d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
5.1	96.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-22	107	Zm.5785.2.A1_at	AY106694.1	-	-	3e+0	At5g50930	DNA binding	C.G.	S.X.	Please select
0.04	1e-22	107	Zm.5785.2.S1_at	AY106694.1	-	-	3e+0	At5g50930	DNA binding	C.G.	S.X.	Please select
0.04	3e-20	99	Zm.5641.1.A1_at	AI629775	Na+/H+ antiporter, probable CP0838	-	1e-47	At3g19490	ATNHD1	C.G.	S.X.	Please select
0.05	3e-20	99	Zm.11621.1.A1_x_at	BG836316	diphthamide biosynthesis protein 3	-	6e+0	At4g24130	unknown protein	C.G.	S.X.	Please select
0.05	3e-20	99	Zm.11621.1.A1_at	BG836316	-	-	6e+0	At4g24130	unknown protein	C.G.	S.X.	Please select
0.06	1e-19	97	Zm.9513.1.A1_at	BM349310	-	-	1e+0	At1g50340	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.02	8e-18	91	Zm.14380.1.A1_at	CN071495	-	-	2e-34	At5g13630	GUN5 (GENOMES UNCOUPLED 5)	C.G.	S.X.	Please select
0.04	3e-17	89	Zm.8914.1.S1_at	BM073720	hypothetical protein LOC100275965	-	2e+0	At3g47810	MAG1 (MAIGO 1)	C.G.	S.X.	Please select
0.05	1e-16	87	Zm.18995.1.A1_at	CO528199	-	-	3e-1	At1g47960	C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	4e-6	54	Arabidopsis thaliana	At5g39660	833962	CDF2 (CYCLING DOF FACTOR 2)	Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	1e-10	69	Glycine max	GmaAffx.53687.1.S1_at	CA936433	Dof1	-	1e-9	At1g64620	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.13	5e-10	65	Hordeum vulgare	Contig12652_at	Contig12652	-	-	1e+0	At4g00420	double-stranded RNA-binding domain (DsRBD)-containing protein	C.G.	S.X.	Please select
0.30	1e-63	246	Oryza sativa	Os07g0685000	AK119625.1	-	Zn-finger, Dof type domain containing protein	4e-15	At5g62430	CDF1 (CYCLING DOF FACTOR 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	2e-9	65	Populus trichocarpa	PtpAffx.221506.1.S1_at	pmrna38424	f-box family protein	-	9e-14	At3g45610	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	2e-48	194	Triticum aestivum	TaAffx.121145.1.S1_at	BF199556	-	-	4e-17	At5g62430	CDF1 (CYCLING DOF FACTOR 1)	C.G.	S.X.	Please select
0.02	2e-2	40	Vitis vinifera	1615083_at	CB914242	-	-	1e-38	At4g24060	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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