Gene omics information

Query gene ID	Zm.19240.1.A1_at
Gene name	DNA binding protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	79.5	Zm.19240.1.A1_at	CF624777	DNA binding protein	-	1e+0	At5g54490	PBP1 (PINOID-BINDING PROTEIN 1)	S.X.	H.G.	Please select
0.60	77.8	Zm.537.2.S1_at	CF054696	hypothetical protein LOC100273405	-	1e-46	At4g02930	elongation factor Tu, putative / EF-Tu, putative	S.X.	H.G.	Please select
0.60	77.8	Zm.4255.1.A1_at	AY112172.1	-	-	2e+0	At5g23750	remorin family protein	S.X.	H.G.	Please select
0.57	75.1	Zm.12936.1.A1_at	AY108987.1	-	-	7e-1	At3g21338	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.2768.1.A1_at	AW067159	Hypothetical protein LOC100193535	-	1e+0	At5g04760	myb family transcription factor	S.X.	H.G.	Please select
0.40	48.5	Zm.12977.2.S1_at	AI677017	Hypothetical protein LOC100193319	-	5e-5	At1g15370	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.1	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	2e-19	95	Zm.5574.1.S1_at	CF636602	-	-	2e+0	At1g01520	myb family transcription factor	C.G.	S.X.	Please select
0.08	2e-19	95	Zm.5574.1.A1_at	CF636602	-	-	2e+0	At1g01520	myb family transcription factor	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.3699.4.S1_at	CD441140	-	-	5e-3	At3g63130	RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.2542.1.A1_at	CF636373	Hypothetical protein LOC100193839	-	3e-13	At1g29030	apoptosis inhibitory 5 (API5) family protein	C.G.	S.X.	Please select
0.02	9e+0	30	Zm.5965.1.A1_at	AI665966	Hypothetical protein LOC100192560	-	2e+0	At5g19140	AILP1	C.G.	S.X.	Please select
0.01	9e+0	30	Zm.3460.1.S1_at	CK827849	-	-	1e-31	At5g27030	TPR3 (TOPLESS-RELATED 3)	C.G.	S.X.	Please select
0.01	9e+0	30	Zm.3028.1.S1_at	AI670583	-	-	5e-8	At1g21170	SEC5B	C.G.	S.X.	Please select
0.01	9e+0	30	Zm.2443.1.A1_at	CF632996	hypothetical protein LOC100272920	-	3e+0	At4g19645	-	C.G.	S.X.	Please select
0.02	9e+0	30	Zm.16173.1.A1_s_at	AY108851.1	hypothetical protein LOC100192560	-	9e-2	At2g45250	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At5g54490	835537	PBP1 (PINOID-BINDING PROTEIN 1)	Encodes a PINOID (PID)-binding protein containing putative EF-hand calcium-binding motifs. The interaction is dependent on the presence of calcium. mRNA expression is up-regulated by auxin. Not a phosphorylation target of PID, likely acts upstream of PID to regulate the activity of this protein in response to changes in calcium levels.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	5e-1	36	Glycine max	GmaAffx.91390.1.S1_at	CF807115	MYB transcription factor MYB133 /// MYB transcription factor MYB146	-	2e-4	At4g01280	myb family transcription factor	C.G.	S.X.	Please select
0.12	6e-32	137	Hordeum vulgare	Contig10662_at	Contig10662	-	-	2e-1	At5g52660	myb family transcription factor	C.G.	S.X.	Please select
0.11	2e-25	117	Oryza sativa	Os06g0105700	AK111956.1	-	Protein of unknown function DUF6 domain containingprotein	7e-1	At5g28630	glycine-rich protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.202373.1.S1_at	pmrna4768	cytochrome P450	-	7e-1	At4g14270	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	1e-22	107	Triticum aestivum	Ta.3242.2.S1_at	CD892793	-	-	4e-21	At1g01520	myb family transcription factor	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1609188_at	CD715995	hypothetical protein LOC100267424	-	2e-11	At5g54490	PBP1 (PINOID-BINDING PROTEIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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