Gene omics information

Query gene ID	Zm.19181.2.S1_a_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.97	99.9	Zm.19181.2.S1_a_at	CF634947	-	-	4e-3	At3g56900	aladin-related / adracalin-related	S.X.	H.G.	Please select
0.33	36.0	Zm.13228.1.S1_at	CA452580	LHT1	-	5e+0	At4g17585	unknown protein	S.X.	H.G.	Please select
0.32	33.4	Zm.6874.1.S1_at	BM080052	Hypothetical protein LOC100193230	-	4e-3	At1g47490	ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C)	S.X.	H.G.	Please select
0.30	29.8	Zm.2763.1.S1_at	AW067129	hypothetical protein LOC100191545	-	9e-7	At1g19710	glycosyl transferase family 1 protein	S.X.	H.G.	Please select
0.29	28.1	Zm.15242.1.A1_at	BM340075	-	-	1e+1	At3g16712	unknown protein	S.X.	H.G.	Please select
0.25	21.3	Zm.6234.2.S1_at	AI881460	-	-	8e-7	At2g30110	ATUBA1	S.X.	H.G.	Please select
0.24	19.8	Zm.8311.2.A1_a_at	BM073622	-	-	4e+0	At4g23090	unknown protein	S.X.	H.G.	Please select
0.23	18.6	Zm.7054.1.S1_at	BM331766	actin-depolymerizing factor 6	-	6e-4	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	S.X.	H.G.	Please select
0.23	18.6	Zm.5661.1.A1_at	AY107527.1	-	-	1e+0	At2g33585	unknown protein	S.X.	H.G.	Please select
0.20	14.2	Zm.2805.1.A1_at	AW352682	hypothetical protein LOC100274443	-	5e+0	At4g13266	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.3	99.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.9	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.7	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	5e-1	34	Zm.4037.1.A1_at	X67561.1	Zmhox1a homeobox protein	-	3e-5	At3g19510	HAT3.1	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.3076.1.A1_at	CF624721	mitochondrial import inner membrane translocase subunit Tim10	-	2e-12	At2g29530	mitochondrial import inner membrane translocase (TIM10)	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.9580.1.A1_at	BM332976	hypothetical protein LOC100277774	-	6e+0	At5g24155	squalene monooxygenase, putative / squalene epoxidase, putative	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.9580.1.A1_a_at	BM332976	hypothetical protein LOC100277774	-	6e+0	At5g24155	squalene monooxygenase, putative / squalene epoxidase, putative	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.9244.1.A1_at	BQ538694	hypothetical protein LOC100194342	-	7e-10	At5g08710	regulator of chromosome condensation (RCC1) family protein / UVB-resistance protein-related	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.6516.1.S1_at	AI438697	CUE domain containing protein	-	7e-1	At5g10350	polyadenylate-binding protein family protein / PABP family protein	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.6058.1.A1_at	AY596178.1	hypothetical LOC542172	-	3e-24	At3g62560	GTP-binding protein, putative	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.5416.1.A1_at	AI491453	hypothetical protein LOC100279267	-	5e-1	At4g18975	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.4011.1.S1_at	AY112578.1	-	-	3e-54	At5g20570	RBX1 (RING-BOX 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	4e-3	42	Arabidopsis thaliana	At3g56900	824857	aladin-related / adracalin-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBFOPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	4e-7	56	Glycine max	GmaAffx.84109.1.A1_at	CD406589	-	-	3e+0	At3g56900	aladin-related / adracalin-related	C.G.	S.X.	Please select
0.20	5e-35	147	Hordeum vulgare	Contig17434_at	Contig17434	-	-	8e-8	At3g56900	aladin-related / adracalin-related	C.G.	S.X.	Please select
0.25	8e-68	258	Oryza sativa	Os11g0132700	AK103286.1	-	Cytochrome cd1-nitrite reductase-like, C-terminalhaem d1 domain containing protein	1e-6	At3g56900	aladin-related / adracalin-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	3e-5	50	Populus trichocarpa	PtpAffx.25868.1.S1_at	CX656578	-	-	1e-20	At3g56900	aladin-related / adracalin-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.31	2e-36	153	Triticum aestivum	Ta.10143.1.S1_a_at	CD892982	-	-	4e-5	At3g56900	aladin-related / adracalin-related	C.G.	S.X.	Please select
0.08	6e-12	69	Vitis vinifera	1616298_at	CF213113	-	-	1e-18	At3g56900	aladin-related / adracalin-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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