Gene omics information

Query gene ID	Zm.19149.1.S1_at
Gene name	hypothetical protein LOC100272365
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.19149.1.S1_at	CO526376	hypothetical protein LOC100272365	-	2e-1	At3g44020	thylakoid lumenal P17.1 protein	S.X.	H.G.	Please select
0.91	99.0	Zm.3642.1.A1_at	CA404841	hypothetical protein LOC100273944	-	1e-1	At1g63522	-	S.X.	H.G.	Please select
0.83	95.6	Zm.11685.1.A1_at	BM379931	hypothetical protein LOC100194378	-	3e-1	At1g72645	unknown protein	S.X.	H.G.	Please select
0.80	94.0	ZmAffx.135.1.A1_at	AI667706	purine permease	-	3e+0	At2g43540	unknown protein	S.X.	H.G.	Please select
0.73	89.9	Zm.11811.1.S1_at	CF052353	glycosyltransferase 5 /// glycosyltransferase 5	-	3e-10	At3g62720	XT1 (XYLOSYLTRANSFERASE 1)	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.535.1.S1_at	AI711782	-	-	2e-1	At1g23270	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
45.5	100.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
42.7	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
35.5	99.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.6	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.6	99.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.7	99.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.59	0	1578	Zm.19149.1.A1_at	CO526377	-	-	2e-1	At3g44020	thylakoid lumenal P17.1 protein	C.G.	S.X.	Please select
0.04	2e-2	40	Zm.13120.1.A1_at	CK347606	Hypothetical protein LOC100191270	-	4e-2	At2g01340	unknown protein	C.G.	S.X.	Please select
0.03	7e-2	38	Zm.16829.2.S1_at	AY105706.1	hypothetical protein LOC100277102	-	5e-4	At4g33985	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.8466.1.S1_at	BQ538688	macrophage migration inhibitory factor	-	4e-11	At5g01650	macrophage migration inhibitory factor family protein / MIF family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.3098.1.A1_at	BM379893	caffeoyl-CoA O-methyltransferase 1	-	7e-10	At4g34050	caffeoyl-CoA 3-O-methyltransferase, putative	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.233.1.S1_s_at	BG837909	Caffeoyl-CoA O-methyltransferase 2 /// hypothetical protein LOC100192601 /// caffeoyl-CoA O-methyltransferase 1	-	5e-14	At4g34050	caffeoyl-CoA 3-O-methyltransferase, putative	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.3907.1.S1_at	L81162.2	AGAMOUS-like protein /// M2 protein	-	3e-15	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.303.1.S1_at	AF236373.1	hypersensitive induced reaction1	-	1e-42	At5g62740	band 7 family protein	C.G.	S.X.	Please select
0.02	5e+0	32	ZmAffx.1033.1.A1_at	AI881710	-	-	8e-1	At1g12064	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	38	Arabidopsis thaliana	At3g44020	823519	thylakoid lumenal P17.1 protein	F:unknown;P:unknown;C:chloroplast thylakoid lumen;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e-6	54	Glycine max	GmaAffx.90596.1.S1_s_at	CF806321	-	-	5e-3	At4g33985	unknown protein	C.G.	S.X.	Please select
0.13	6e-18	91	Hordeum vulgare	Contig12932_at	Contig12932	-	-	3e-2	At4g33985	unknown protein	C.G.	S.X.	Please select
0.14	8e-27	123	Oryza sativa	OsAffx.12199.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	36	Populus trichocarpa	Ptp.5579.1.A1_at	CV270590	hypothetical protein	-	3e-5	At4g33985	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	8e-7	56	Triticum aestivum	Ta.12712.1.S1_at	BJ251458	-	-	4e-2	At4g33985	unknown protein	C.G.	S.X.	Please select
0.04	8e-1	34	Vitis vinifera	1619240_at	CB348525	hypothetical protein LOC100250717	-	6e-7	At4g33985	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage