Gene omics information

Query gene ID	Zm.19143.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.19143.1.A1_at	CF626055	-	-	1e-11	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	S.X.	H.G.	Please select
0.83	95.6	Zm.17219.2.S1_a_at	AY106749.1	adenine phosphoribosyltransferase	-	1e-5	At1g80050	APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2)	S.X.	H.G.	Please select
0.67	85.8	Zm.12222.1.A1_at	BQ048339	-	-	8e-9	At1g20580	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	S.X.	H.G.	Please select
0.63	81.1	Zm.10551.1.A1_at	BQ538249	hypothetical protein LOC100194275	-	1e+1	At5g52760	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select
0.57	75.1	Zm.2860.2.A1_at	AY107982.1	hypothetical protein LOC100192742	-	1e+0	At5g19510	elongation factor 1B alpha-subunit 2 (eEF1Balpha2)	S.X.	H.G.	Please select
0.29	28.1	Zm.15061.1.S1_at	BE050291	calmodulin	-	3e+0	At3g48040	ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
39.8	99.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
39.7	99.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
33.4	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6	99.1	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320473	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320462	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	3e-112	404	Zm.19324.1.A1_at	CK986141	hypothetical protein LOC100279823	-	6e-3	At3g13065	SRF4 (STRUBBELIG-RECEPTOR FAMILY 4)	C.G.	S.X.	Please select
0.12	6e-46	184	Zm.12317.1.S1_at	AY106969.1	ethylene-responsive transcription factor 4	-	2e-12	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	C.G.	S.X.	Please select
0.03	2e-9	63	Zm.1140.1.S1_at	BM073428	hypothetical protein LOC100279272	-	4e-14	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	C.G.	S.X.	Please select
0.04	9e-8	57	Zm.9130.1.A1_at	BM268570	-	-	7e-2	At3g62220	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.02	9e-8	57	Zm.5300.1.A1_at	AI734564	-	-	5e-9	At5g01020	protein kinase family protein	C.G.	S.X.	Please select
0.03	4e-7	56	Zm.8505.1.A1_at	AY107567.1	-	-	1e-4	At1g51870	protein kinase family protein	C.G.	S.X.	Please select
0.03	1e-6	54	Zm.8626.1.A1_at	BM348921	hypothetical protein LOC100274398	-	1e+0	At5g61600	ethylene-responsive element-binding family protein	C.G.	S.X.	Please select
0.03	1e-6	54	Zm.4702.1.A1_at	CA401021	-	-	9e-3	At4g36180	leucine-rich repeat family protein	C.G.	S.X.	Please select
0.04	6e-6	52	ZmAffx.812.1.A1_at	AI770420	-	-	8e-4	At1g49730	protein kinase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	1e-11	71	Arabidopsis thaliana	At3g15210	820752	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-4). The protein contains one AP2 domain. Acts as a negative regulator of JA-responsive defense gene expression and resistance to the necrotrophic fungal pathogen Fusarium oxysporum and antagonizes JA inhibition of root elongation.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	2e-26	121	Glycine max	Gma.4463.1.S1_at	CD390833	-	-	3e-24	At1g53170	ERF8	C.G.	S.X.	Please select
0.12	2e-46	186	Hordeum vulgare	Contig6636_at	Contig6636	-	-	4e-11	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	C.G.	S.X.	Please select
0.15	1e-31	139	Oryza sativa	Os02g0648100	AK111267.1	-	Protein kinase domain containing protein	1e-2	At3g13065	SRF4 (STRUBBELIG-RECEPTOR FAMILY 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	7e-2	40	Populus trichocarpa	Ptp.3705.1.A1_s_at	CV247356	AP2/ERF domain-containing transcription factor	-	8e-3	At1g28360	ERF12 (ERF DOMAIN PROTEIN 12)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	5e-27	123	Triticum aestivum	Ta.14000.1.S1_at	BQ789086	ethylene-responsive factor-like transcription factor ERFL1a	-	1e-5	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	C.G.	S.X.	Please select
0.11	3e-22	105	Vitis vinifera	1616198_at	CF405950	hypothetical protein LOC100242144	-	1e-7	At1g28370	ERF11 (ERF DOMAIN PROTEIN 11)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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