Gene omics information

Query gene ID	Zm.19103.1.S1_at
Gene name	hypothetical protein LOC100193224
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	74.4	Zm.19103.1.S1_at	CF625279	hypothetical protein LOC100193224	-	3e+0	At4g09490	RNase H domain-containing protein	S.X.	H.G.	Please select
0.59	76.1	Zm.16394.1.S1_at	CF272871	-	-	1e-1	At2g03470	myb family transcription factor / ELM2 domain-containing protein	S.X.	H.G.	Please select
0.57	75.1	Zm.17295.1.A1_at	CK347563	-	-	2e+0	At2g18050	HIS1-3 (HISTONE H1-3)	S.X.	H.G.	Please select
0.50	65.7	Zm.306.1.S1_s_at	AF291748.1	HMGI/Y protein /// high mobility group I/Y-2	-	2e+0	At3g47620	AtTCP14 (TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14)	S.X.	H.G.	Please select
0.48	61.3	Zm.5851.6.A1_a_at	L46399.1	MADS box protein	-	2e-8	At4g18960	AG (AGAMOUS)	S.X.	H.G.	Please select
0.46	58.4	Zm.19158.2.S1_a_at	BM073998	hypothetical protein LOC100273021 /// thioredoxin F-type	-	3e-11	At5g16400	ATF2	S.X.	H.G.	Please select
0.43	52.8	Zm.15085.1.A1_at	AI065806	-	-	4e-11	At4g14070	AAE15 (acyl-activating enzyme 15)	S.X.	H.G.	Please select
0.36	41.3	Zm.6142.1.A1_at	AY105151.1	annexin p33	-	2e-1	At5g10220	ANN6 (ANNEXIN ARABIDOPSIS 6)	S.X.	H.G.	Please select
0.36	41.3	Zm.4406.1.A1_at	AI834053	splicing factor, arginine/serine-rich 12	-	2e+0	At2g26695	binding / zinc ion binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.8	96.6	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
4.6	96.4	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
4.4	96.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.7	95.4	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	2970	Zm.19103.1.A1_at	AY104453.1	Hypothetical protein LOC100193224	-	3e+0	At4g09490	RNase H domain-containing protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.8611.1.A1_at	BM339289	hypothetical protein LOC100276849	-	1e-1	At5g19590	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.8336.1.S2_at	AB061270.1	NAS1 protein	-	4e+0	At2g44360	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.8336.1.S1_at	AB061270.1	NAS1 protein	-	4e+0	At2g44360	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.8336.1.S1_x_at	AB061270.1	NAS1 protein	-	4e+0	At2g44360	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.18029.1.A1_at	BG842376	hypothetical protein LOC100191174	-	6e-1	At5g42670	agenet domain-containing protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.18086.1.S1_at	CK986086	-	-	6e+0	At4g30662	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.1068.1.S1_at	BM381276	sedoheptulose-1,7-bisphosphatase	-	2e-19	At3g55800	SBPASE (sedoheptulose-bisphosphatase)	C.G.	S.X.	Please select
0.02	5e+0	32	ZmAffx.751.1.A1_at	AI745874	-	-	1e+1	At5g44990	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	34	Arabidopsis thaliana	At4g09490	826533	RNase H domain-containing protein	F:ribonuclease H activity, nucleic acid binding;P:biological_process unknown;C:endomembrane system;PBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	Gma.12611.1.S1_at	CD392431	-	-	1e+0	At1g31720	unknown protein	C.G.	S.X.	Please select
0.54	0	706	Hordeum vulgare	Contig9729_at	Contig9729	-	-	3e+0	At3g56580	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.55	0	777	Oryza sativa	Os11g0182400	AK112089.1	-	Cyclin-like F-box domain containing protein	4e+0	At4g38580	ATFP6 (FARNESYLATED PROTEIN 6)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+0	36	Populus trichocarpa	PtpAffx.222656.1.S1_at	pmrna40203	hypothetical protein	-	4e-2	At1g33340	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.30	1e-55	218	Triticum aestivum	TaAffx.120315.1.S1_at	BJ232066	-	-	4e+0	At4g25660	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1619534_at	CB007558	similar to Os02g0722700	-	2e+1	At5g02960	40S ribosomal protein S23 (RPS23B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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