Gene omics information

Query gene ID	Zm.19099.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.19099.1.S1_at	CO530975	-	-	4e+0	At2g32650	-	S.X.	H.G.	Please select
0.60	77.8	Zm.7559.1.A1_at	AY110410.1	-	-	6e-3	At5g48370	thioesterase family protein	S.X.	H.G.	Please select
0.26	22.7	ZmAffx.1110.1.A1_at	AW225256	-	-	8e-1	At5g06250	transcription factor	S.X.	H.G.	Please select
0.17	10.6	Zm.1228.2.A1_at	AI795581	Hypothetical protein LOC100191844	-	1e-34	At5g10840	endomembrane protein 70, putative	S.X.	H.G.	Please select
0.08	3.4	Zm.15418.1.A1_at	AY109016.1	Hypothetical protein LOC100191383	-	1e+1	At5g43570	serine-type endopeptidase inhibitor	S.X.	H.G.	Please select
0.05	1.9	ZmAffx.189.2.A1_a_at	AI668397	hypothetical protein LOC100278348	-	8e-1	At1g70510	KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.7	99.5	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
15.1	98.9	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
14.2	98.8	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM206326	Upper pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
10.9	98.5	GSM385710	Deep-sowing 10d treatment TIBA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
10.6	98.4	GSM206308	Lower pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
10.0	98.4	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
9.6	98.3	GSM375795	Deep-sowing 10d treatment Control, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
8.7	98.1	GSM206290	Upper pulvinus 15 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
8.4	98.1	GSM206302	Upper pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-2	38	Zm.18365.1.A1_at	CF626505	-	-	1e-3	At1g13750	calcineurin-like phosphoesterase family protein	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.7397.1.A1_at	BQ539216	hypothetical protein LOC100277233	-	5e-4	At3g05550	hypoxia-responsive family protein	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.6252.1.A1_at	CF630074	hypothetical protein LOC100273493	-	8e-9	At1g76200	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	36	Zm.388.1.A1_at	AF047852.1	terminal ear1	-	3e-7	At3g26120	TEL1 (TERMINAL EAR1-LIKE 1)	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.1920.1.A1_a_at	BM332434	hypothetical protein AY109668 /// hypothetical protein LOC100273332 /// hypothetical protein LOC100275218	-	7e-4	At3g05550	hypoxia-responsive family protein	C.G.	S.X.	Please select
0.04	1e-1	36	Zm.17347.1.S1_at	CK370714	hypothetical protein LOC100217009	-	1e-9	At4g17310	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.13810.1.S1_at	AB042267.1	hypothetical protein LOC100191253	-	6e-8	At3g56380	ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17)	C.G.	S.X.	Please select
0.04	4e-1	34	ZmAffx.903.1.A1_at	AI770912	-	-	1e+1	At3g42310	unknown protein	C.G.	S.X.	Please select
0.04	4e-1	34	ZmAffx.372.1.A1_at	AI673888	anther-specific protein SF18	-	8e-1	At3g59680	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e+0	32	Arabidopsis thaliana	At2g32650	817825	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	6e-6	52	Glycine max	Gma.1124.1.S1_at	AW757129	-	-	1e-14	At1g50640	ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3)	C.G.	S.X.	Please select
0.04	5e-1	34	Hordeum vulgare	HF11A03r_at	HF11A03r	-	-	2e-1	At3g61980	serine protease inhibitor, Kazal-type family protein	C.G.	S.X.	Please select
0.05	1e-1	38	Oryza sativa	Os08g0551200	9636.m04454	-	Protein of unknown function DUF630 domaincontaining protein	4e-1	At5g47220	ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e-1	36	Populus trichocarpa	Ptp.3633.1.S1_at	BU895378	hypothetical protein	-	1e+0	At4g19060	disease resistance protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	2e-14	79	Triticum aestivum	Ta.17378.1.S1_at	CA484005	-	-	7e-3	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1614938_at	CF510883	-	-	4e+0	At4g15790	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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