Gene omics information

Query gene ID	Zm.19066.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.1	Zm.19066.1.S1_at	CD975063	-	-	1e-37	At2g02000	GAD3 (glutamate decarboxylase 3)	S.X.	H.G.	Please select
0.64	81.7	Zm.17497.1.A1_at	BG266429	hypothetical protein LOC100273930	-	3e+0	Atmg00140	-	S.X.	H.G.	Please select
0.59	76.1	Zm.2134.1.A1_at	AI734434	-	-	9e-2	At2g41780	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.749.1.S1_at	AY291061.1	photosystem II subunit PsbS1	-	8e-7	At1g44575	NPQ4 (NONPHOTOCHEMICAL QUENCHING)	S.X.	H.G.	Please select
0.47	59.9	Zm.6049.3.A1_a_at	AI734480	phosphatidylinositol transporter/ transporter	-	3e-3	At1g76640	calmodulin-related protein, putative	S.X.	H.G.	Please select
0.42	51.3	Zm.18446.1.A1_at	CO518758	-	-	3e-2	At1g29800	phosphoinositide binding / zinc ion binding	S.X.	H.G.	Please select
0.42	51.3	Zm.13681.1.S1_at	AY106895.1	hypothetical protein LOC100191679	-	4e-10	At1g12370	PHR1 (PHOTOLYASE 1)	S.X.	H.G.	Please select
0.38	44.2	Zm.6146.1.A1_at	CD989568	brassinosteroid biosynthesis-like protein	-	1e-40	At3g19820	DWF1 (DWARF 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.1	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.0	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.2	99.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.6	99.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.5	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.2	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	2e-141	502	Zm.8186.1.A1_at	BM073199	hypothetical protein LOC100191549	-	4e-8	At5g17330	GAD	C.G.	S.X.	Please select
0.33	6e-105	381	Zm.3849.1.A1_at	AY103733.1	-	-	4e-14	At1g65960	GAD2 (GLUTAMATE DECARBOXYLASE 2)	C.G.	S.X.	Please select
0.53	6e-105	381	Zm.3849.1.S1_at	CK370197	glutamate decarboxylase	-	3e-21	At3g17760	GAD5 (glutamate decarboxylase 5)	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.604.1.A1_at	AF326490.1	plasma membrane integral protein ZmPIP1-6	-	1e-5	At1g01620	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.16326.1.S1_at	CO523105	hypothetical protein LOC100274361	-	4e-9	At5g65990	amino acid transporter family protein	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.12249.1.A1_at	AI738004	-	-	5e-8	At3g55010	PUR5	C.G.	S.X.	Please select
0.01	2e+0	34	ZmAffx.602.1.A1_at	AI715030	-	-	8e-1	At1g30670	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.01	2e+0	34	ZmAffx.602.1.S1_at	AI715030	-	-	8e-1	At1g30670	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.01	2e+0	34	ZmAffx.1053.1.A1_at	AI881846	-	-	3e+0	At1g16240	SYP51 (SYNTAXIN OF PLANTS 51)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	1e-37	159	Arabidopsis thaliana	At2g02000	814731	GAD3 (glutamate decarboxylase 3)	F:calmodulin binding;P:carboxylic acid metabolic process, glutamate metabolic process, glutamate decarboxylation to succinate;C:cellular_component unknown;BFPOMAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	3e-29	131	Glycine max	PsAffx.CL202Contig1_at	PsAffx.CL202Contig1	-	-	3e+0	At2g02010	GAD4 (glutamate decarboxylase 4)	C.G.	S.X.	Please select
0.69	0	1746	Hordeum vulgare	Contig1373_at	Contig1373	-	-	4e-40	At2g02000	GAD3 (glutamate decarboxylase 3)	C.G.	S.X.	Please select
0.64	0	1705	Oryza sativa	Os03g0236200	AK071556.1	-	Glutamate decarboxylase isozyme 3 (EC 4.1.1.15)	4e-65	At2g02010	GAD4 (glutamate decarboxylase 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.35	4e-56	220	Populus trichocarpa	PtpAffx.208104.1.S1_at	pmrna16098	hypothetical protein	-	6e-125	At5g17330	GAD	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.57	0	1297	Triticum aestivum	Ta.7341.1.S1_at	CD892913	hypothetical LOC542956	-	6e-33	At1g65960	GAD2 (GLUTAMATE DECARBOXYLASE 2)	C.G.	S.X.	Please select
0.30	2e-39	163	Vitis vinifera	1607457_at	CB341759	hypothetical protein LOC100256481	-	2e-84	At5g17330	GAD	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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