Gene omics information

Query gene ID	Zm.18992.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.18992.1.A1_at	CO521210	-	-	4e-1	At5g20370	serine-rich protein-related	S.X.	H.G.	Please select
0.80	94.0	Zm.13427.1.S1_at	AF124738.1	hypothetical protein LOC100194389	-	1e-7	At4g21520	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.77	92.1	Zm.5834.1.A1_a_at	BM335098	-	-	6e+0	At4g01260	transcription regulator	S.X.	H.G.	Please select
0.55	71.6	Zm.19306.1.A1_at	AI664819	hypothetical protein LOC100193355	-	6e-1	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.2330.1.S1_at	BE552610	-	-	4e-15	At2g42120	POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT)	S.X.	H.G.	Please select
0.31	31.6	Zm.18946.1.A1_at	BM338625	hypothetical protein LOC100278262	-	1e+0	At1g69660	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.8	99.7	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.5	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2	98.8	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320473	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-2	38	Zm.5170.1.S1_at	CF349172	hypothetical protein LOC100216995	-	1e-5	At1g44970	peroxidase, putative	C.G.	S.X.	Please select
0.03	4e-2	38	Zm.17115.1.S1_at	CN844978	-	-	1e+0	At5g67490	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.8806.1.A1_at	BM075728	-	-	2e+1	At5g35640	-	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.16142.1.S1_at	CF243882	hypothetical protein LOC100194402	-	9e-1	At5g51210	OLEO3 (OLEOSIN3)	C.G.	S.X.	Please select
0.03	2e-1	36	Zm.15861.1.A1_at	AW355929	lil3 protein	-	8e-2	At5g47110	lil3 protein, putative	C.G.	S.X.	Please select
0.03	2e-1	36	Zm.1443.1.A1_at	BI358844	hypothetical protein LOC100276732	-	3e-1	At5g23260	TT16 (TRANSPARENT TESTA16)	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.9653.1.A1_at	BM335707	-	-	7e-2	At5g23170	protein kinase family protein	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.688.1.A1_at	AJ250985.1	outer cell layer3	-	8e-9	At4g00730	ANL2 (ANTHOCYANINLESS 2)	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.6732.4.S1_at	AY105066.1	hypothetical protein LOC100193321	-	1e-2	At4g10110	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-1	36	Arabidopsis thaliana	At5g20370	832159	serine-rich protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-1	38	Glycine max	HgAffx.15728.1.S1_at	CB281266	-	-	9e-1	At4g28750	PSAE-1 (PSA E1 KNOCKOUT)	C.G.	S.X.	Please select
0.03	5e-2	38	Hordeum vulgare	Contig11647_at	Contig11647	-	-	4e-11	At5g57280	methyltransferase	C.G.	S.X.	Please select
0.14	4e-12	73	Oryza sativa	OsAffx.31633.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e-1	36	Populus trichocarpa	PtpAffx.219855.1.S1_s_at	pmrna36007	hypothetical protein	-	3e-1	At5g62360	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	3e-2	40	Triticum aestivum	Ta.20944.2.S1_at	CA635261	-	-	4e+0	At5g57060	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1615712_s_at	CB911214	similar to nascent polypeptide associated complex alpha	-	2e-43	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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