CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.18983.1.A1_at

Gene name L-allo-threonine aldolase

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 92.1 Zm.18983.1.A1_at AI795441 L-allo-threonine aldolase - 9e-10 At1g08630 THA1 (Threonine Aldolase 1) S.X. H.G.
0.83 95.6 Zm.7756.1.A1_at BQ538566 hypothetical protein LOC100279912 - 1e+0 At1g28140 unknown protein S.X. H.G.
0.77 92.1 Zm.12345.1.A1_at BM416967 mediator complex subunit 10 CG5057-PA - 2e-3 At1g26665 - S.X. H.G.
0.60 77.8 Zm.7779.1.A1_at CF630385 3-hydroxybutyryl-CoA dehydratase - 4e-8 At4g16210 ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A) S.X. H.G.
0.57 75.1 Zm.6325.1.A1_at CF625024 snRK1-interacting protein 1 - 6e+0 At5g24355 unknown protein S.X. H.G.
0.50 65.7 Zm.2583.1.S1_at CN845475 ATP/GTP binding protein - 8e+0 At3g23240 ERF1 (ETHYLENE RESPONSE FACTOR 1) S.X. H.G.
0.46 58.4 Zm.7776.1.A1_at BM331974 hypothetical protein LOC100193214 - 7e-3 At3g49550 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.8 98.8 GSM205423 B73xMo17 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
12.1 98.6 GSM205429 B73xMo17 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
11.2 98.5 GSM205425 B73 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
10.9 98.5 GSM205436 B73xMo17 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
10.7 98.5 GSM205421 B73 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
9.7 98.3 GSM205433 B73 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
4.2 96.0 GSM206325 Upper pulvinus 5 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.1 95.9 GSM206301 Upper pulvinus 5 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.0 95.8 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8 95.5 GSM162266 Wild type 2 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 4e-1 36 Zm.9498.1.A1_at BM338582 - - 9e-2 At3g21660 UBX domain-containing protein C.G. S.X.
0.01 4e-1 36 Zm.283.1.S1_at AY254104.1 benzoxazinless1 - 5e-2 At4g01220 - C.G. S.X.
0.02 1e+0 34 ZmAffx.800.1.A1_at AI770361 - - 2e-4 At3g58580 hydrolase C.G. S.X.
0.02 1e+0 34 ZmAffx.800.1.S1_at AI770361 hypothetical protein LOC100279626 - 2e-4 At3g58580 hydrolase C.G. S.X.
0.01 1e+0 34 Zm.5668.1.S1_at CO525286 hypothetical protein LOC100193892 - 7e-4 At2g43030 ribosomal protein L3 family protein C.G. S.X.
0.01 1e+0 34 Zm.565.1.A1_at AF244705.1 glutathione transferase40 - 3e-2 At1g59700 ATGSTU16 (GLUTATHIONE S-TRANSFERASE TAU 16) C.G. S.X.
0.01 1e+0 34 Zm.3409.1.S1_at CK369841 hypothetical protein LOC100278796 - 7e+0 At1g65483 unknown protein C.G. S.X.
0.01 1e+0 34 Zm.10798.1.A1_at CF003582 Hypothetical protein LOC100191405 - 1e-2 At1g26930 kelch repeat-containing F-box family protein C.G. S.X.
0.02 6e+0 32 ZmAffx.889.1.A1_at AI770841 - - 8e-7 At2g40650 pre-mRNA splicing factor PRP38 family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 9e-10 65 Arabidopsis thaliana At1g08630 837385 THA1 (Threonine Aldolase 1) Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings. - - - C.G. S.X.
0.09 5e-12 73 Glycine max Gma.2183.1.S1_at CD402949 - - 3e-9 At3g04520 THA2 (Threonine Aldolase 2) C.G. S.X.
0.47 3e-168 591 Hordeum vulgare Contig16415_at Contig16415 - - 4e-12 At1g08630 THA1 (Threonine Aldolase 1) C.G. S.X.
0.52 0 640 Oryza sativa Os04g0516600 AK059652.1 - Conserved hypothetical protein 2e-10 At3g04520 THA2 (Threonine Aldolase 2) C.G. S.X.
0.11 2e-5 52 Populus trichocarpa Ptp.4749.1.S1_at BI128337 hypothetical protein - 5e-10 At3g04520 THA2 (Threonine Aldolase 2) C.G. S.X.
0.51 2e-171 603 Triticum aestivum Ta.1229.1.S1_x_at CA697796 - - 4e-8 At3g04520 THA2 (Threonine Aldolase 2) C.G. S.X.
0.06 1e-3 44 Vitis vinifera 1617466_at CB977275 hypothetical protein LOC100265578 - 2e-6 At1g08630 THA1 (Threonine Aldolase 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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