Gene omics information

Query gene ID	Zm.18954.1.A1_at
Gene name	hypothetical protein LOC100273399
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.18954.1.A1_at	CO533875	hypothetical protein LOC100273399	-	2e+0	At1g68960	unknown protein	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.915.1.S1_at	AI770972	-	-	8e+0	Atmg01050	-	S.X.	H.G.	Please select
0.60	77.8	ZmAffx.865.1.S1_at	AI770727	hypothetical protein LOC100191495	-	3e+0	At5g26830	threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)	S.X.	H.G.	Please select
0.44	55.7	Zm.9940.1.A1_at	BM339055	-	-	3e-2	At5g26860	LON1 (LON PROTEASE 1)	S.X.	H.G.	Please select
0.29	28.1	Zm.4171.1.A1_at	BG841769	isoamyl acetate-hydrolyzing esterase	-	3e+0	At1g69190	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase/ dihydropteroate synthase	S.X.	H.G.	Please select
0.27	24.6	Zm.17816.2.S1_a_at	CK144883	tRNA pseudouridine synthase family protein	-	2e-2	At1g76120	tRNA pseudouridine synthase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.2	99.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.4	99.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.7	99.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.1	99.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.3	99.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
8.8	98.1	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
7.3	97.8	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.47	8e-115	412	Zm.18245.1.S1_at	AI665288	-	-	2e+0	At5g18130	unknown protein	C.G.	S.X.	Please select
0.27	3e-65	248	Zm.17301.1.A1_at	CF624899	hypothetical protein LOC100272664	-	5e-1	At4g32570	TIFY8 (TIFY DOMAIN PROTEIN 8)	C.G.	S.X.	Please select
0.15	6e-23	107	Zm.4929.2.A1_a_at	AI586452	hypothetical protein LOC100192571	-	3e+0	At5g28620	protein kinase C-related	C.G.	S.X.	Please select
0.15	6e-23	107	Zm.4929.2.S1_at	AI586452	Hypothetical protein LOC100192571	-	3e+0	At5g28620	protein kinase C-related	C.G.	S.X.	Please select
0.21	1e-20	99	Zm.18233.1.S1_at	CN845506	-	-	4e+0	At3g06760	-	C.G.	S.X.	Please select
0.02	3e-3	42	Zm.6692.2.S1_a_at	BQ295538	hypothetical protein LOC100193785	-	5e-14	At3g24530	AAA-type ATPase family protein / ankyrin repeat family protein	C.G.	S.X.	Please select
0.02	3e-3	42	Zm.6692.2.A1_at	AY109106.1	-	-	5e-14	At3g24530	AAA-type ATPase family protein / ankyrin repeat family protein	C.G.	S.X.	Please select
0.02	1e-2	40	Zm.4760.1.A1_at	AY108728.1	hypothetical protein LOC100276972	-	5e-1	At1g34000	OHP2 (ONE-HELIX PROTEIN 2)	C.G.	S.X.	Please select
0.03	1e-2	40	Zm.3019.1.A1_at	CK368018	pollen-specific arabinogalacta protein BAN102	-	1e+0	At2g41905	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At1g68960	843230	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	36	Glycine max	GmaAffx.70625.1.S1_at	BM732315	-	-	2e-1	At3g49580	LSU1 (RESPONSE TO LOW SULFUR 1)	C.G.	S.X.	Please select
0.22	5e-27	121	Hordeum vulgare	Contig11998_at	Contig11998	-	-	1e-1	At1g69210	unknown protein	C.G.	S.X.	Please select
0.21	2e-26	121	Oryza sativa	Os04g0450600	9632.m03553	-	Conserved hypothetical protein	2e+0	At5g51610	ribosomal protein L11 family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e+0	34	Populus trichocarpa	PtpAffx.98695.1.S1_s_at	BU830106	hypothetical protein	-	1e+0	At4g04745	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	2e-12	73	Triticum aestivum	TaAffx.102572.1.S1_at	CA593369	-	-	1e+0	At1g03022	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	Vitis vinifera	1619399_s_at	CB914618	-	-	1e-1	At2g30560	glycine-rich protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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