Gene omics information

Query gene ID	Zm.18946.1.A1_at
Gene name	hypothetical protein LOC100278262
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.18946.1.A1_at	BM338625	hypothetical protein LOC100278262	-	1e+0	At1g69660	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	S.X.	H.G.	Please select
0.61	79.5	Zm.19212.1.S1_at	BE238501	-	-	1e-1	At1g06160	ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)	S.X.	H.G.	Please select
0.61	79.5	Zm.4164.1.A1_x_at	BM079246	-	-	5e+0	At3g01860	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.17192.1.A1_at	BM339467	-	-	5e+0	At2g22520	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.9975.1.A1_at	BM074697	-	-	7e-6	At5g64200	ATSC35	S.X.	H.G.	Please select
0.33	36.0	Zm.13427.1.S1_at	AF124738.1	hypothetical protein LOC100194389	-	1e-7	At4g21520	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.0	99.6	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.9	99.5	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.2	99.3	GSM320440	protocol: mRNA - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM202282	B73 11-day seedling aerial tissue biological replicate 2	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
4.2	96.0	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM253256	ZM_2d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
3.8	95.5	GSM202278	B73 11-day seedling aerial tissue biological replicate 1	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	9e-3	40	Zm.5344.1.A1_at	AI619336	-	-	5e+0	At2g25500	-	C.G.	S.X.	Please select
0.03	6e-1	34	ZmAffx.728.1.A1_at	AI740010	hypothetical protein LOC100216633	-	3e+0	At2g21180	unknown protein	C.G.	S.X.	Please select
0.03	6e-1	34	ZmAffx.728.1.S1_at	AI740010	-	-	3e+0	At2g21180	unknown protein	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.3888.1.S1_at	CD447810	hypothetical protein LOC100274332	-	1e-5	At1g21410	SKP2A	C.G.	S.X.	Please select
0.03	6e-1	34	Zm.2551.1.A1_at	BG841855	-	-	3e-1	At1g62422	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.10401.1.S1_at	CO524902	glyoxylate reductase	-	3e-12	At1g79870	oxidoreductase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.18859.1.A1_at	CO529366	3-alpha-L-fucosyltransferase /// core alpha 1,3-fucosyltransferase	-	5e+0	At3g17980	C2 domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.14136.1.A1_at	AY104147.1	hypothetical protein LOC100193727	-	1e-21	At1g27340	F-box family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.10974.1.A1_at	CB350776	-	-	4e+0	At1g71840	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At1g69660	843302	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e-1	36	Glycine max	GmaAffx.84133.1.A1_at	CD411236	-	-	3e-6	At3g50890	AtHB28 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 28)	C.G.	S.X.	Please select
0.05	7e-13	73	Hordeum vulgare	Contig12710_at	Contig12710	-	-	4e-5	At3g10405	unknown protein	C.G.	S.X.	Please select
0.08	1e-14	81	Oryza sativa	Os10g0545100	CA765892	-	Conserved hypothetical protein	3e-5	At3g10405	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e-2	40	Populus trichocarpa	PtpAffx.205001.1.S1_at	pmrna9896	hypothetical protein	-	3e-1	At1g34290	AtRLP5 (Receptor Like Protein 5)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	4e-7	56	Triticum aestivum	TaAffx.112042.1.S1_at	CA687270	-	-	1e-3	At3g10405	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1607314_at	CF516457	-	-	1e+0	At3g03020	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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