Gene omics information

Query gene ID	Zm.1894.2.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.86	96.3	Zm.1894.2.S1_at	CK371174	-	-	1e-4	At5g18800	NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.4164.4.A1_a_at	BM267227	-	-	3e+1	At5g53180	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	S.X.	H.G.	Please select
0.35	38.9	Zm.3008.1.S1_at	BM416985	-	-	2e-29	At2g40810	AtATG18c	S.X.	H.G.	Please select
0.32	33.4	Zm.19001.1.A1_at	AY108422.1	-	-	3e-6	At3g01540	DRH1 (DEAD BOX RNA HELICASE 1)	S.X.	H.G.	Please select
0.29	28.1	Zm.15418.1.S1_at	AY109016.1	Hypothetical protein LOC100191383	-	4e+0	At3g09900	ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E)	S.X.	H.G.	Please select
0.28	28.1	Zm.564.1.S1_a_at	AF244704.1	glutathione S-transferase GST 39	-	3e-2	At2g36640	ATECP63 (EMBRYONIC CELL PROTEIN 63)	S.X.	H.G.	Please select
0.25	21.3	Zm.19167.1.A1_at	AI629472	hypothetical protein LOC100194096	-	1e-17	At4g10000	electron carrier/ protein disulfide oxidoreductase	S.X.	H.G.	Please select
0.25	21.3	Zm.7847.1.A1_at	BM080149	-	-	1e+0	At3g27416	unknown protein	S.X.	H.G.	Please select
0.25	21.3	Zm.4467.1.S1_a_at	AW054142	hypothetical protein LOC100193777	-	1e-5	At1g36280	adenylosuccinate lyase, putative / adenylosuccinase, putative	S.X.	H.G.	Please select
0.24	19.8	Zm.10105.1.A1_at	BM379807	-	-	5e+0	At4g11870	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.6	92.9	GSM253273	ZM_4.5d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
2.4	92.2	GSM205367	Mo17xB73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.4	92.2	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.4	92.2	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.3	91.7	GSM205375	Mo17xB73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.3	91.7	GSM205424	Mo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.3	91.7	GSM253272	ZM_4.5d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
2.3	91.7	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.3	91.7	GSM253245	ZM_12h_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
2.2	91.3	GSM290554	WS2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.59	0	700	Zm.1894.1.A1_at	AY104896.1	-	-	8e-12	At3g06310	NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein	C.G.	S.X.	Please select
0.59	0	700	Zm.1894.1.A1_a_at	AY104896.1	NADH-ubiquinone oxidoreductase 19 kDa subunit	-	8e-12	At3g06310	NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein	C.G.	S.X.	Please select
0.02	1e-2	40	Zm.7308.1.S1_at	AF384033.1	HD2 type histone deacetylase HDA106	-	2e+0	At3g61260	DNA-binding family protein / remorin family protein	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.8786.1.A1_at	BM267294	-	-	2e+1	At5g11070	unknown protein	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.15457.1.S1_at	CD448433	sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating	-	2e-13	At2g26260	AT3BETAHSD/D2 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 2)	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.12571.1.A1_at	AI833612	ribosome recycling factor	-	5e-1	At3g01800	ribosome recycling factor family protein / ribosome releasing factor family protein	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.12571.1.S1_at	AY112399.1	-	-	5e-1	At3g01800	ribosome recycling factor family protein / ribosome releasing factor family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.7457.1.A1_at	BM078465	cold shock protein-1	-	1e+0	At5g40645	nitrate-responsive NOI protein, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.5969.2.A1_a_at	AI629909	hypothetical protein LOC100272999 /// hypothetical protein LOC100273990	-	2e+0	At5g59030	COPT1 (copper transporter 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	1e-4	48	Arabidopsis thaliana	At5g18800	831998	NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein	F:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:unknown;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	2e-6	54	Glycine max	GmaAffx.90872.1.S1_at	CF806597	-	-	5e-21	At3g06310	NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein	C.G.	S.X.	Please select
0.41	4e-92	337	Hordeum vulgare	Contig5873_at	Contig5873	-	-	3e-11	At3g06310	NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein	C.G.	S.X.	Please select
Os07g0191000	0.36	6e-85	Oryza sativa	Os03g0295500	-	-	-	0			C.G.	S.X.	Please select
0.14	4e-2	40	Populus trichocarpa	Ptp.4385.1.S1_at	CV247957	hypothetical protein	-	5e-34	At5g18800	NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.61	2e-129	462	Triticum aestivum	TaAffx.112485.2.S1_at	CA617617	-	-	3e-7	At5g18800	NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein	C.G.	S.X.	Please select
0.06	9e-9	59	Vitis vinifera	1614537_at	CB919204	hypothetical protein LOC100266511	-	1e-31	At3g06310	NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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