Gene omics information

Query gene ID	Zm.1881.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.8	Zm.1881.1.S1_at	CF011561	-	-	5e-1	At3g17590	BSH (BUSHY GROWTH)	S.X.	H.G.	Please select
0.71	88.2	Zm.12634.4.S1_a_at	CF057123	60S ribosomal protein L23	-	8e-61	At1g04480	60S ribosomal protein L23 (RPL23A)	S.X.	H.G.	Please select
0.67	85.8	Zm.3137.1.S1_at	AY111766.1	-	-	6e+0	At5g24780	VSP1 (VEGETATIVE STORAGE PROTEIN 1)	S.X.	H.G.	Please select
0.55	71.6	Zm.12821.1.A1_at	CA398688	-	-	1e+1	At5g47320	RPS19 (RIBOSOMAL PROTEIN S19)	S.X.	H.G.	Please select
0.44	55.7	Zm.12713.1.S1_at	BI478939	-	-	1e-24	At3g19170	ATPREP1 (PRESEQUENCE PROTEASE 1)	S.X.	H.G.	Please select
0.21	15.5	Zm.1079.4.S1_at	AY109373.1	-	-	2e-2	At5g14740	CA2 (CARBONIC ANHYDRASE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.9	99.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.9	99.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.9	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.9	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.9	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.7	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.1	99.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.8	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.6	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	1709	Zm.1881.1.A1_at	AY110751.1	-	-	5e-1	At3g17590	BSH (BUSHY GROWTH)	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.9300.1.A1_at	BM267911	-	-	9e-2	At3g47180	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.5997.1.S1_at	CA404117	Hypothetical protein LOC100192979	-	4e-3	At5g23950	C2 domain-containing protein	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.4230.1.S1_at	CO523811	-	-	4e-5	At1g17650	GLYR2 (GLYOXYLATE REDUCTASE 2)	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.17357.1.S1_at	CK370769	-	-	5e+0	At1g29195	unknown protein	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.1330.1.S1_at	AY104880.1	hypothetical protein LOC100272442	-	4e-2	At4g31580	SRZ-22	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.8032.1.A1_at	AI737866	acyl-CoA synthetase long-chain family member 3	-	2e-14	At2g04350	long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.2458.1.S1_at	CA403461	hypothetical protein LOC100273658	-	3e-108	At5g62700	TUB3	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.17275.1.A1_at	CF244151	hypothetical protein LOC100273442	-	1e-33	At5g42090	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	36	Arabidopsis thaliana	At3g17590	821025	BSH (BUSHY GROWTH)	Encodes the Arabidopsis homologue of yeast SNF5 and represents a conserved subunit of plant SWI/SNF complexes.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-1	38	Glycine max	Gma.235.1.S1_x_at	U68763.1	scof-1 protein	-	6e-7	At5g67450	AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1)	C.G.	S.X.	Please select
0.02	2e-1	36	Hordeum vulgare	Contig8466_s_at	Contig8466	-	-	8e-2	At5g44570	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	36	Oryza sativa	Os08g0389700	AK105152.1	-	Protein of unknown function DUF81 domaincontaining protein	2e-5	At2g25737	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e-1	36	Populus trichocarpa	Ptp.6101.1.S1_at	BU886352	hypothetical protein	-	2e-29	At1g77710	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	Ta.5241.1.S1_at	BJ279090	-	-	5e+0	At5g13410	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	C.G.	S.X.	Please select
0.03	9e-3	40	Vitis vinifera	1622873_at	CA818444	hypothetical LOC100251339	-	2e-11	At1g12760	protein binding / ubiquitin-protein ligase/ zinc ion binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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