Gene omics information

Query gene ID	Zm.18743.1.A1_at
Gene name	palmitoyltransferase ZDHHC9
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.8	Zm.18743.1.A1_at	CK985678	palmitoyltransferase ZDHHC9	-	6e-17	At5g50020	zinc finger (DHHC type) family protein	S.X.	H.G.	Please select
0.73	89.9	Zm.2376.4.A1_x_at	CK368489	cortical cell-delineating protein	-	6e+0	At3g24510	-	S.X.	H.G.	Please select
0.73	89.9	Zm.3144.1.S1_at	CD441537	nucleic acid binding protein	-	3e+0	At4g20420	tapetum-specific protein-related	S.X.	H.G.	Please select
0.67	85.8	Zm.14040.1.A1_at	CF051487	C-4 methylsterol oxidase	-	6e-20	At4g22756	SMO1-2 (STEROL C4-METHYL OXIDASE 1-2)	S.X.	H.G.	Please select
0.61	79.5	Zm.5290.1.S1_at	AY104548.1	F-box domain containing protein	-	4e+0	At3g07260	forkhead-associated domain-containing protein / FHA domain-containing protein	S.X.	H.G.	Please select
0.60	77.8	Zm.4190.1.A1_at	BE344878	-	-	9e-31	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.1	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	36	Zm.5393.1.S1_at	CF056132	-	-	2e-26	At1g80400	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.4190.1.A1_at	BE344878	-	-	9e-31	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.2442.1.A1_at	BG841393	hypothetical protein LOC100193531	-	2e-1	At2g45190	AFO (ABNORMAL FLORAL ORGANS)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.6848.2.A1_at	CF004955	-	-	9e-47	At1g57720	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.6848.2.A1_x_at	CF004955	-	-	9e-47	At1g57720	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	C.G.	S.X.	Please select
0.02	5e+0	32	Zm.6339.1.A1_at	AI691450	-	-	3e-1	At5g11930	glutaredoxin family protein	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.5851.13.S1_a_at	CF060445	hypothetical protein LOC100274074	-	2e-20	At4g37550	formamidase, putative / formamide amidohydrolase, putative	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.5851.13.A1_at	CF060445	-	-	4e-27	At4g37560	formamidase, putative / formamide amidohydrolase, putative	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.2631.1.S1_at	AY107698.1	hypothetical protein LOC100191885	-	5e-5	At2g21730	CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	6e-17	89	Arabidopsis thaliana	At5g50020	835066	zinc finger (DHHC type) family protein	F:zinc ion binding;P:biological_process unknown;C:plasma membrane;MOFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	36	Glycine max	GmaAffx.88403.1.S1_at	AI794799	-	-	1e-27	At3g56930	zinc finger (DHHC type) family protein	C.G.	S.X.	Please select
0.33	1e-93	343	Hordeum vulgare	Contig13178_at	Contig13178	-	-	6e-17	At5g50020	zinc finger (DHHC type) family protein	C.G.	S.X.	Please select
0.28	2e-83	311	Oryza sativa	Os05g0436900	AK064076.1	-	Zn-finger, DHHC type domain containing protein	3e-16	At5g50020	zinc finger (DHHC type) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	3e-16	87	Populus trichocarpa	PtpAffx.201785.1.S1_at	pmrna3560	hypothetical protein	-	3e-45	At4g24630	receptor/ zinc ion binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	9e-13	75	Triticum aestivum	Ta.8276.1.A1_at	BQ161683	-	-	5e+0	At5g55010	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1619662_at	CF404114	hypothetical protein LOC100262648	-	1e+0	At3g21360	electron carrier/ oxidoreductase	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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