Gene omics information

Query gene ID	Zm.18726.1.A1_at
Gene name	hypothetical protein LOC100272741
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.8	Zm.18726.1.A1_at	BM075022	hypothetical protein LOC100272741	-	1e+0	At4g38060	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.2390.1.S1_at	CF628678	hypothetical protein LOC100276791	-	1e-1	At5g09850	transcription elongation factor-related	S.X.	H.G.	Please select
0.56	74.4	Zm.4891.1.S1_at	BF729097	-	-	5e-1	At3g14850	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.8233.1.A1_at	AI947630	-	-	1e-2	At4g31580	SRZ-22	S.X.	H.G.	Please select
0.46	58.4	Zm.4385.1.S1_at	BQ487047	small nuclear ribonucleoprotein-associated protein B	-	3e-15	At5g44500	small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative	S.X.	H.G.	Please select
0.45	56.4	Zm.4764.1.S1_at	AI739879	vacuolar protein sorting 37C	-	2e-3	At2g36680	-	S.X.	H.G.	Please select
0.44	55.7	Zm.17770.1.S1_at	CK371626	hypothetical protein LOC100274091	-	4e+0	At5g54145	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.16805.3.S1_at	BM381902	basic endochitinase C	-	2e-10	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	S.X.	H.G.	Please select
0.38	44.2	Zm.12037.1.S1_at	BI894209	bHLH transcription factor PTF1	-	4e-2	At4g30980	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.37	42.3	Zm.3633.2.S1_x_at	CF634876	APx1 - Cytosolic Ascorbate Peroxidase	-	3e-28	At1g07890	APX1 (ascorbate peroxidase 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.7	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM206304	Upper pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.1	96.8	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.1	95.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	4e-2	38	Zm.10133.1.A1_at	CD441295	ruBisCO large subunit-binding protein subunit beta	-	2e-60	At1g55490	CPN60B (CHAPERONIN 60 BETA)	C.G.	S.X.	Please select
0.04	4e-2	38	Zm.10133.2.S1_at	AI833460	-	-	5e-1	At3g46870	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.01	4e-2	38	Zm.10133.1.A1_a_at	CD441295	ruBisCO large subunit-binding protein subunit beta	-	2e-60	At1g55490	CPN60B (CHAPERONIN 60 BETA)	C.G.	S.X.	Please select
0.01	1e-1	36	Zm.403.1.S1_at	AF063865.1	xylanase1	-	1e-2	At4g33840	glycosyl hydrolase family 10 protein	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.2262.1.S1_at	CF010907	hypothetical protein LOC100273743	-	8e+0	At4g29460	phospholipase A2 gamma, secretory low molecular weight	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.12127.1.A1_at	CO519754	-	-	4e+0	At1g62333	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.8822.1.A1_at	AY105347.1	glycerol-3-phosphate acyltransferase 8	-	3e-19	At2g38110	GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.6141.1.S1_at	CA399949	MAPK	-	4e-15	At1g10210	ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.368.1.A1_a_at	AF020813.1	glucose-6-phosphate/phosphate-translocator precursor /// hypothetical protein LOC100193334	-	4e-37	At1g61800	GPT2	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At4g38060	829962	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e+0	34	Glycine max	GmaAffx.22346.2.S1_at	BM177133	-	-	6e-9	At1g71080	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Hordeum vulgare	Contig19897_at	Contig19897	-	-	1e-1	At2g21910	CYP96A5	C.G.	S.X.	Please select
0.34	9e-62	238	Oryza sativa	OsAffx.7001.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.218228.1.S1_s_at	pmrna33778	hypothetical protein	-	8e-1	At4g27530	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	2e-5	50	Triticum aestivum	TaAffx.29876.1.S1_at	CA633693	-	-	4e+0	At1g17455	ELF4-L4 (ELF4-Like 4)	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1609379_at	CF413649	-	-	4e+0	At5g35550	TT2 (TRANSPARENT TESTA 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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