Gene omics information

Query gene ID	Zm.1866.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.1866.1.A1_at	AW498013	-	-	5e-7	At4g11270	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.53	69.1	ZmAffx.706.1.A1_at	AI738209	-	-	8e-1	At1g23590	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.10798.1.A1_at	CF003582	Hypothetical protein LOC100191405	-	1e-2	At1g26930	kelch repeat-containing F-box family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.10799.1.S1_at	AY108939.1	hypothetical protein LOC100192060	-	3e+0	At5g20110	dynein light chain, putative	S.X.	H.G.	Please select
0.40	48.5	Zm.4541.1.S1_at	AY104176.1	hypothetical protein LOC100274427	-	5e-8	At5g67400	peroxidase 73 (PER73) (P73) (PRXR11)	S.X.	H.G.	Please select
0.22	16.9	Zm.8584.1.A1_at	BM340099	-	-	4e+0	At2g31430	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.4	96.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.7	93.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7	93.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	Zm.6207.5.S1_at	CA399572	60S ribosomal protein L15	-	1e-44	At4g17390	60S ribosomal protein L15 (RPL15B)	C.G.	S.X.	Please select
0.01	8e-1	34	ZmAffx.7.1.S1_at	AY683004.1	monosaccharide transport protein 1	-	4e-9	At1g50310	STP9 (SUGAR TRANSPORTER 9)	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.9374.1.A1_at	BM268403	-	-	8e-2	At3g12870	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.16475.4.S1_at	BG841751	-	-	1e-3	At1g06960	small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.7132.1.A1_a_at	BM381861	hypothetical protein LOC100275673	-	5e+0	At5g41761	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.5943.1.A1_at	AI665888	-	-	3e-1	At5g30510	RPS1 (RIBOSOMAL PROTEIN S1)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.3935.1.S1_at	AY105293.1	-	-	7e-20	At4g34890	XDH1 (XANTHINE DEHYDROGENASE 1)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.2247.1.A1_at	BG321065	hypothetical protein LOC100193340	-	1e-21	At1g76550	pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.13696.1.A1_at	CF035266	Hypothetical protein LOC100192791	-	2e+0	At4g37685	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-7	56	Arabidopsis thaliana	At4g11270	826729	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:cytosol;MFBOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e-6	54	Glycine max	Gma.4997.2.S1_at	BE658925	-	-	2e-10	At4g11270	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.02	4e+0	32	Hordeum vulgare	Contig24281_at	Contig24281	-	-	6e-2	At1g18750	AGL65 (AGAMOUS-LIKE 65)	C.G.	S.X.	Please select
0.16	1e-89	331	Oryza sativa	Os06g0331300	AK121512.1	-	Hypothetical protein	3e-3	At4g11270	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e-9	63	Populus trichocarpa	PtpAffx.200403.1.S1_at	pmrna807	hypothetical protein	-	2e-25	At4g11270	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	8e-9	61	Triticum aestivum	TaAffx.128517.1.S1_at	CA595851	-	-	2e+0	At2g06020	myb family transcription factor	C.G.	S.X.	Please select
0.03	8e+0	30	Vitis vinifera	1621090_at	CB978759	hypothetical protein LOC100262179	-	3e-30	At5g22330	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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