Gene omics information

Query gene ID	Zm.186.1.S1_at
Gene name	Bowman-Birk type wound-induced proteinase inhibitor WIP1
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	Zm.186.1.S1_at	X71396.1	Bowman-Birk type wound-induced proteinase inhibitor WIP1	-	1e+0	At1g20000	TAF11b (TBP-ASSOCIATED FACTOR 11b)	S.X.	H.G.	Please select
0.67	85.8	Zm.2780.1.A1_at	CF057723	hypothetical protein LOC100278371	-	4e-1	At1g14270	CAAX amino terminal protease family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.2713.2.A1_at	AI881541	-	-	1e-30	At5g60790	ATGCN1	S.X.	H.G.	Please select
0.40	48.5	Zm.14354.1.S1_x_at	CK370303	40S ribosomal protein S29 /// 40S ribosomal protein S29	-	2e-11	At4g33865	40S ribosomal protein S29 (RPS29C)	S.X.	H.G.	Please select
0.33	36.0	Zm.6131.1.S1_at	AY105213.1	hypothetical protein LOC100191528	-	7e-1	At1g74560	NRP1 (NAP1-RELATED PROTEIN 1)	S.X.	H.G.	Please select
0.31	31.6	Zm.5196.1.A1_at	BM334572	PHD-finger family protein	-	1e+0	At2g24430	ANAC038 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 38)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
37.9	99.9	GSM385710	Deep-sowing 10d treatment TIBA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
35.2	99.9	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
20.7	99.4	GSM375791	Deep-sowing 10d treatment GA3, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
17.9	99.2	GSM385707	Deep-sowing 10d treatment IAA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
17.5	99.1	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
16.4	99.0	GSM253277	ZM_8d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
16.3	99.0	GSM375796	Deep-sowing 10d treatment GA3, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
16.1	99.0	GSM385708	Deep-sowing 10d treatment IAA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
12.6	98.7	GSM375795	Deep-sowing 10d treatment Control, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
11.0	98.5	GSM253279	ZM_8d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	36	Zm.4664.2.A1_at	AI737871	-	-	5e-3	At2g26640	KCS11 (3-KETOACYL-COA SYNTHASE 11)	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.959.1.A1_at	AY103702.1	photosystem I N subunit1	-	1e-4	At5g64040	PSAN	C.G.	S.X.	Please select
0.03	6e-1	34	Zm.8837.1.A1_at	BM075845	-	-	5e+0	At5g13190	-	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.997.1.A1_at	CF059773	hypothetical protein LOC100275923	-	1e+0	At2g17040	anac036 (Arabidopsis NAC domain containing protein 36)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.9247.1.A1_at	BG842289	hypothetical protein LOC100280369	-	5e-20	At2g35630	MOR1 (MICROTUBULE ORGANIZATION 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.8854.1.A1_at	BM332798	-	-	4e-1	At5g05987	PRA1.A2 (PRENYLATED RAB ACCEPTOR 1.A2)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.8656.1.A1_at	BM336261	hypothetical protein LOC100192906	-	4e-2	At5g27440	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.731.1.A1_at	CA404803	-	-	1e-22	At4g26600	nucleolar protein, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.7019.1.S1_at	CF628137	hypothetical protein LOC100192047	-	1e-7	At1g73230	nascent polypeptide-associated complex (NAC) domain-containing protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At1g20000	838589	TAF11b (TBP-ASSOCIATED FACTOR 11b)	Encodes TAF11b, a putative TBP-associated factor (TBP: TATA binding protein).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e-1	36	Glycine max	PsAffx.CL2618Contig1_s_at	PsAffx.CL2618Contig1	-	-	4e-3	At1g07890	APX1 (ascorbate peroxidase 1)	C.G.	S.X.	Please select
0.10	3e+0	32	Hordeum vulgare	Contig2243_at	Contig2243	-	-	1e+0	At5g50890	-	C.G.	S.X.	Please select
0.29	3e-52	206	Oryza sativa	Os01g0132000	AB059238.1	-	Bowman-Birk type wound induced proteinaseinhibitor WIP1 precursor	4e-1	At2g37780	DC1 domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.138169.1.S1_at	BI129010	hypothetical protein	-	2e-26	At1g04140	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	1e+0	34	Triticum aestivum	Ta.21350.1.S1_x_at	L11882.1	Wali5 protein	-	6e+0	At4g26930	MYB97 (myb domain protein 97)	C.G.	S.X.	Please select
0.06	6e+0	30	Vitis vinifera	1618987_at	CB974787	hypothetical protein LOC100267493	-	2e-1	At2g43795	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage