Gene omics information

Query gene ID	Zm.18593.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	79.5	Zm.18593.1.A1_at	CO519699	-	-	1e+0	At1g64130	unknown protein	S.X.	H.G.	Please select
0.23	18.6	Zm.19043.1.S1_at	AY109466.1	-	-	1e-1	At3g50550	unknown protein	S.X.	H.G.	Please select
0.20	14.2	Zm.4650.1.S1_a_at	CA399108	formate dehydrogenase2	-	4e-15	At5g14780	FDH (FORMATE DEHYDROGENASE)	S.X.	H.G.	Please select
0.18	11.6	Zm.18025.1.S1_at	AY521228.1	osmotic stimulation MAPK	-	7e-2	At1g18040	CDKD1	S.X.	H.G.	Please select
0.06	2.3	Zm.8514.1.A1_at	AY104758.1	PREG-like protein	-	5e+0	At5g35525	unknown protein	S.X.	H.G.	Please select
0.03	1.1	Zm.13728.2.S1_a_at	AY106266.1	alpha-expansin 4	-	1e-14	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.5	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.8	97.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.9	97.3	GSM206329	Right pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.9	97.3	GSM206331	Lower pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e+0	32	ZmAffx.437.1.A1_at	AI676955	Hypothetical protein LOC100193309	-	3e+0	At2g26130	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	2e+0	32	ZmAffx.437.1.S1_at	AI676955	Hypothetical protein LOC100193309	-	3e+0	At2g26130	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.8331.1.A1_at	BM349811	-	-	9e-3	At1g72430	auxin-responsive protein-related	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.6469.1.S1_at	BE345306	-	-	4e+0	At3g03405	-	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.6015.1.A1_at	AI666198	-	-	1e+0	At5g24570	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.5225.1.A1_at	AI615012	hypothetical protein LOC100273591	-	4e-2	At5g48740	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.2976.1.S1_at	AF045033.1	nitrate-induced NOI protein	-	2e-3	At2g04410	-	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.2234.1.S1_a_at	CO526542	hypothetical protein LOC100276749 /// hypothetical protein LOC100276758	-	2e+1	At5g53486	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.19113.1.S1_at	CF044700	hypothetical protein LOC100274625	-	8e+0	At5g12980	rcd1-like cell differentiation protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At1g64130	842717	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-2	40	Glycine max	GmaAffx.25598.1.S1_at	AW311255	-	-	3e+0	At5g26300	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.04	3e+0	32	Hordeum vulgare	HVSMEf0005J23r2_x_at	HVSMEf0005J23r2	-	-	2e+0	At2g32710	KRP4	C.G.	S.X.	Please select
0.08	1e-8	61	Oryza sativa	Os01g0236300	AK102521.1	-	Auxin response factor 18	2e-2	At4g23980	ARF9 (AUXIN RESPONSE FACTOR 9)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	8e+0	32	Populus trichocarpa	PtpAffx.91816.1.S1_at	DN484981	-	-	8e-1	At4g07868	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.13	6e-6	52	Triticum aestivum	Ta.4027.1.A1_at	BJ262736	-	-	3e-1	At5g51195	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1619716_at	CF519146	hypothetical protein LOC100263592	-	1e-21	At1g59750	ARF1 (AUXIN RESPONSE FACTOR 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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