Gene omics information

Query gene ID	Zm.18571.1.A1_at
Gene name	Hypothetical protein LOC100217207
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.8	Zm.18571.1.A1_at	CO518311	Hypothetical protein LOC100217207	-	1e+0	At5g61790	calnexin 1 (CNX1)	S.X.	H.G.	Please select
0.36	41.3	ZmAffx.1068.1.S1_at	AI941684	Hypothetical protein LOC100192986	-	3e+0	At3g25719	unknown protein	S.X.	H.G.	Please select
0.27	24.6	Zm.19206.1.A1_at	BE552928	hypothetical protein LOC100274600	-	5e-8	At2g16860	GCIP-interacting family protein	S.X.	H.G.	Please select
0.19	12.8	ZmAffx.978.1.A1_at	AI833953	-	-	6e-23	Atcg00770	-	S.X.	H.G.	Please select
0.19	12.8	Zm.10833.1.A1_at	AY109775.1	-	-	5e+0	At5g64140	RPS28 (RIBOSOMAL PROTEIN S28)	S.X.	H.G.	Please select
0.17	10.6	Zm.9241.1.A1_at	CK826930	-	-	2e-7	At4g23470	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.13	6.8	Zm.17951.1.A1_at	CF630424	-	-	1e+0	At5g16790	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
46.1	100.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
42.1	99.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
40.0	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.7	99.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.5	99.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.4	99.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	4e-42	171	Zm.10226.1.A1_at	BM332464	-	-	4e+0	At2g13720	ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)	C.G.	S.X.	Please select
0.05	2e-6	52	Zm.7603.1.A1_a_at	BQ539534	ribosomal RNA methyltransferase 1	-	3e-5	At5g01230	FtsJ-like methyltransferase family protein	C.G.	S.X.	Please select
0.02	4e-2	38	Zm.6431.1.A1_at	CO525297	hypothetical protein LOC100193964	-	3e+0	At5g07600	oleosin / glycine-rich protein	C.G.	S.X.	Please select
0.01	4e-2	38	Zm.5767.1.A1_at	AI714844	hypothetical protein LOC100273619	-	8e-2	At3g53850	-	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.6380.1.A1_at	BG266095	-	-	1e+1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.1920.2.A1_x_at	CA404079	hypothetical protein AY109668 /// hypothetical protein LOC100275218	-	5e-4	At3g05550	hypoxia-responsive family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.1920.2.A1_a_at	CA404079	hypothetical protein AY109668 /// hypothetical protein LOC100273332 /// hypothetical protein LOC100275218	-	5e-4	At3g05550	hypoxia-responsive family protein	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.5783.1.A1_at	AY109300.1	-	-	2e+0	At5g67600	unknown protein	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.30.1.S1_a_at	AF371264.1	15kD beta zein /// prolamin PPROL 17 /// 15 kDa zein protein	-	2e-1	At5g60360	AALP (Arabidopsis aleurain-like protease)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At5g61790	836301	calnexin 1 (CNX1)	F:unfolded protein binding, calcium ion binding;P:protein folding;C:in 8 components;MOPFBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	HgAffx.17426.1.S1_at	CB278930	-	-	4e+0	At5g05440	unknown protein	C.G.	S.X.	Please select
0.13	5e-14	77	Hordeum vulgare	Contig10851_at	Contig10851	-	-	2e-1	At5g34940	AtGUS3 (Arabidopsis thaliana glucuronidase 3)	C.G.	S.X.	Please select
0.11	3e-21	103	Oryza sativa	Os02g0802200	AK107538.1	-	Glycoside hydrolase, family 79, N-terminal domaincontaining protein	2e-2	At5g34940	AtGUS3 (Arabidopsis thaliana glucuronidase 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	8e+0	32	Populus trichocarpa	PtpAffx.223960.1.S1_s_at	pmrna42186	hypothetical protein	-	3e+0	At2g06255	ELF4-L3 (ELF4-Like 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.22	5e-19	95	Triticum aestivum	TaAffx.15144.1.A1_at	AJ614139	-	-	5e+0	At5g43200	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1613743_at	CD719453	-	-	1e+0	At4g25100	FSD1 (FE SUPEROXIDE DISMUTASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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