Gene omics information

Query gene ID	Zm.18532.1.A1_at
Gene name	hypothetical protein LOC100273655
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	58.4	Zm.18532.1.A1_at	CF637107	hypothetical protein LOC100273655	-	7e-5	At1g14290	SBH2 (SPHINGOID BASE HYDROXYLASE 2)	S.X.	H.G.	Please select
0.46	58.4	Zm.4030.4.A1_at	CF021557	hypothetical protein LOC100194153	-	1e-19	At3g60245	60S ribosomal protein L37a (RPL37aC)	S.X.	H.G.	Please select
0.40	48.5	Zm.4164.4.A1_x_at	BM267227	-	-	3e+1	At5g53180	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	S.X.	H.G.	Please select
0.36	41.3	Zm.13720.1.S1_at	AY106348.1	-	-	1e-18	At3g18040	MPK9 (MAP KINASE 9)	S.X.	H.G.	Please select
0.23	18.6	Zm.2308.1.A1_at	BG841336	hypothetical protein LOC100276079	-	2e-2	At5g66005	Expressed protein	S.X.	H.G.	Please select
0.20	14.2	Zm.17741.1.S1_at	CK370742	-	-	4e+0	At5g21430	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.0	99.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.0	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.0	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.5	99.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.6	99.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.1	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.2	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	34	Zm.6336.1.A1_at	AI691442	-	-	9e-2	At5g60490	FLA12	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.17536.1.A1_at	CK370765	hypothetical protein LOC100273145	-	5e-1	At2g46890	oxidoreductase, acting on the CH-CH group of donors	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.8477.1.S1_at	CD991129	VAMP protein SEC22	-	3e+0	At3g12090	TET6 (TETRASPANIN6)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.7056.4.A1_at	CD434927	-	-	8e-26	At2g06990	HEN2 (hua enhancer 2)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.518.1.A1_at	AF200526.1	cellulose synthase-2	-	9e-120	At4g32410	CESA1 (CELLULOSE SYNTHASE 1)	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.4405.1.A1_at	BG841902	vacuolar sorting protein 4b	-	5e+0	At2g40790	ATCXXS2 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1)	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.4089.1.S1_at	AY108577.1	-	-	8e-2	At5g26340	MSS1	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.3551.1.S1_at	AY105376.1	-	-	5e-18	At1g48490	kinase	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.3551.1.A1_at	AY105376.1	-	-	5e-18	At1g48490	kinase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	7e-5	48	Arabidopsis thaliana	At1g14290	837990	SBH2 (SPHINGOID BASE HYDROXYLASE 2)	Encodes one of the two redundant sphingoid base hydroxylases (SBH). Involved in sphingolipid trihydroxy long-chain base (4-hydroxysphinganine) biosynthesis. Double mutants of SBHs were dwarfed and not able to progress from vegetative to reproductive growth.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	GmaAffx.46669.1.S1_at	BQ079672	-	-	4e+1	At5g39581	unknown protein	C.G.	S.X.	Please select
0.47	7e-65	246	Hordeum vulgare	Contig21556_at	Contig21556	-	-	3e-11	At1g69640	SBH1 (SPHINGOID BASE HYDROXYLASE 1)	C.G.	S.X.	Please select
0.30	1e-32	141	Oryza sativa	Os07g0627700	AK110696.1	-	Sterol desaturase family protein	1e-1	At5g18920	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	4e-1	36	Populus trichocarpa	PtpAffx.284.2.A1_at	CV242099	hypothetical protein	-	4e-4	At1g14290	SBH2 (SPHINGOID BASE HYDROXYLASE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	5e-6	52	Triticum aestivum	Ta.4303.1.S1_at	BQ169124	-	-	5e-7	At1g69640	SBH1 (SPHINGOID BASE HYDROXYLASE 1)	C.G.	S.X.	Please select
0.05	3e-1	34	Vitis vinifera	1614722_at	BQ800628	hypothetical protein LOC100254529	-	4e+0	At1g09995	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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