CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.18525.1.A1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.0 Zm.18525.1.A1_at CO530497 - - 1e-4 At5g28150 unknown protein S.X. H.G.
0.83 95.6 Zm.13494.1.A1_at AY108782.1 - - 4e-1 At2g17300 unknown protein S.X. H.G.
0.80 94.0 Zm.19299.1.A1_at BM074654 - - 4e-3 At4g09270 unknown protein S.X. H.G.
0.77 92.1 Zm.13523.1.A1_at AY108425.1 - - 6e-1 At5g59470 PQ-loop repeat family protein / transmembrane family protein S.X. H.G.
0.73 89.9 Zm.13751.1.S1_at AY105922.1 - - 9e+0 At3g01700 AGP11 S.X. H.G.
0.67 85.8 Zm.5451.1.S1_at AI621979 - - 8e-4 At4g36970 remorin family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.1 98.4 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3 98.0 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3 97.8 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3 97.8 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1 97.7 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7 97.6 GSM253270 ZM_4.5d_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
6.3 97.4 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0 97.3 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9 97.3 GSM253268 ZM_4.5d_Mock_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
5.3 96.9 GSM253269 ZM_4.5d_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 7e-1 34 Zm.240.1.S1_at AJ011619.1 SBP-domain protein 6 - 5e-5 At2g42200 SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9) C.G. S.X.
0.03 7e-1 34 Zm.13621.1.A1_at CF632782 hypothetical protein LOC100191615 - 4e-10 At2g17350 unknown protein C.G. S.X.
0.03 7e-1 34 Zm.11692.1.A1_at BM379959 - - 4e+0 At3g42155 catalytic/ hydrolase, hydrolyzing O-glycosyl compounds C.G. S.X.
0.02 7e-1 34 Zm.10462.1.S1_at CF010422 - - 4e-1 At2g15660 AGL95 (AGAMOUS-LIKE 95) C.G. S.X.
0.02 3e+0 32 Zm.9633.1.S1_at BM380839 - - 2e+1 At5g55507 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.01 3e+0 32 Zm.804.1.A1_at CF627442 chaperone protein dnaJ - 1e-5 At5g48030 GFA2 (GAMETOPHYTIC FACTOR 2) C.G. S.X.
0.01 3e+0 32 Zm.394.1.S1_at U95180.1 hypothetical protein LOC100193093 - 2e-1 At1g23340 unknown protein C.G. S.X.
0.02 3e+0 32 Zm.3098.1.A1_at BM379893 caffeoyl-CoA O-methyltransferase 1 - 7e-10 At4g34050 caffeoyl-CoA 3-O-methyltransferase, putative C.G. S.X.
0.02 3e+0 32 Zm.18999.1.A1_at CO520868 - - 6e+0 At4g05070 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-4 48 Arabidopsis thaliana At5g28150 832890 unknown protein F:unknown;P:biological_process unknown;C:unknown;P - - - C.G. S.X.
0.06 9e-6 52 Glycine max GmaAffx.31177.1.S1_at BE807779 - - 6e+0 At5g08565 positive transcription elongation factor/ zinc ion binding C.G. S.X.
0.36 3e-86 317 Hordeum vulgare Contig13021_at Contig13021 - - 3e+0 At5g66550 Maf family protein C.G. S.X.
0.34 5e-76 286 Oryza sativa Os03g0806700 AK067603.1 - Plant protein of unknown function DUF868 familyprotein 7e-2 At3g04860 unknown protein C.G. S.X.
0.10 9e-3 42 Populus trichocarpa PtpAffx.201729.1.S1_at pmrna3435 hypothetical protein - 5e-7 At5g28150 unknown protein C.G. S.X.
0.46 2e-101 369 Triticum aestivum TaAffx.73677.1.S1_at BJ261865 - - 2e+0 At5g66140 PAD2 (PROTEASOME ALPHA SUBUNIT D 2) C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1608931_at CD799025 similar to AO (L-ASPARTATE OXIDASE); L-aspartate oxidase - 1e+1 At5g41390 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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