Gene omics information

Query gene ID	Zm.18496.1.S1_at
Gene name	hypothetical protein LOC100217235
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.18496.1.S1_at	CO519895	hypothetical protein LOC100217235	-	2e-1	At5g05100	nucleic acid binding	S.X.	H.G.	Please select
0.50	65.7	Zm.5251.1.A1_at	CD982303	hypothetical protein LOC100273610	-	3e-15	At4g20980	eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative	S.X.	H.G.	Please select
0.44	55.7	Zm.1158.1.A1_at	AY107067.1	-	-	4e-31	At5g10270	CDKC	S.X.	H.G.	Please select
0.44	55.7	Zm.12031.1.A1_at	BM382777	-	-	2e+1	At5g05650	-	S.X.	H.G.	Please select
0.44	55.7	Zm.10479.1.S1_at	BQ486450	-	-	5e+0	At5g13990	ATEXO70C2 (exocyst subunit EXO70 family protein C2)	S.X.	H.G.	Please select
0.35	38.9	Zm.2660.1.A1_at	AW066755	hypothetical protein LOC100194122	-	3e-1	At3g19180	ARC6H	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.8	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.7	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	6e-49	194	Zm.326.1.S1_at	AB042269.1	response regulator 7	-	3e+0	At5g41761	unknown protein	C.G.	S.X.	Please select
0.02	2e-5	50	Zm.124.1.S1_at	CF058601	dof zinc finger protein MNB1A	-	7e-7	At3g52440	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.02	8e-5	48	Zm.13996.1.S1_at	AY107676.1	ATP binding protein	-	3e-34	At5g50000	protein kinase, putative	C.G.	S.X.	Please select
0.02	3e-4	46	Zm.6934.1.A1_at	AY105351.1	hypothetical protein LOC100273323	-	9e-6	At3g01790	ribosomal protein L13 family protein	C.G.	S.X.	Please select
0.03	3e-4	46	Zm.13810.1.S1_at	AB042267.1	hypothetical protein LOC100191253	-	6e-8	At3g56380	ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17)	C.G.	S.X.	Please select
0.02	3e-4	46	Zm.12065.1.S1_at	CD219268	hypothetical protein LOC100275823	-	5e-1	At5g52605	-	C.G.	S.X.	Please select
0.02	1e-3	44	Zm.13246.1.S1_at	AY135019.1	PL transcription factor	-	5e-7	At3g13540	ATMYB5 (MYB DOMAIN PROTEIN 5)	C.G.	S.X.	Please select
0.02	5e-3	42	Zm.6181.1.A1_at	AY104864.1	bZIP transcription factor protein	-	6e-1	At5g35110	unknown protein	C.G.	S.X.	Please select
0.02	5e-3	42	Zm.4583.1.A1_at	AI737217	hypothetical protein LOC100280399	-	1e-6	At5g37780	CAM1 (CALMODULIN 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	38	Arabidopsis thaliana	At5g05100	830392	nucleic acid binding	F:nucleic acid binding;P:unknown;C:cellular_component unknown;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e-1	38	Glycine max	PsAffx.psMA016xB12f_at	PsAffx.psMA016xB12f	-	-	9e+0	At4g04630	unknown protein	C.G.	S.X.	Please select
0.04	6e-3	42	Hordeum vulgare	HVSMEk0006G04r2_at	HVSMEk0006G04r2	-	-	2e-1	At4g37790	HAT22	C.G.	S.X.	Please select
0.24	1e-108	395	Oryza sativa	Os04g0442300	AK072736.1	-	ZmRR2 protein (Response regulator 2)	2e-5	At1g10470	ARR4 (RESPONSE REGULATOR 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e-2	40	Populus trichocarpa	PtpAffx.222651.1.S1_at	pmrna40197	hypothetical protein	-	3e+0	At1g20430	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.24	2e-26	121	Triticum aestivum	Ta.25890.1.S1_at	CD454104	-	-	3e+0	At5g41761	unknown protein	C.G.	S.X.	Please select
0.03	6e-5	48	Vitis vinifera	1609442_at	CF373210	hypothetical protein LOC100243127	-	3e-4	At3g05800	transcription factor	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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