Gene omics information

Query gene ID	Zm.18486.1.A1_at
Gene name	hypothetical protein LOC100276684
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.18486.1.A1_at	AW461085	hypothetical protein LOC100276684	-	1e-1	At2g47760	ALG3	S.X.	H.G.	Please select
0.59	76.1	Zm.5767.1.A1_at	AI714844	hypothetical protein LOC100273619	-	8e-2	At3g53850	-	S.X.	H.G.	Please select
0.59	76.1	Zm.19062.1.S1_at	CO531568	glycine-rich RNA-binding protein 2	-	6e+0	At5g51040	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.17115.1.S1_at	CN844978	-	-	1e+0	At5g67490	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.19356.1.A1_at	CO533600	-	-	5e+0	At3g27590	unknown protein	S.X.	H.G.	Please select
0.32	33.4	Zm.17333.1.A1_at	CK369962	-	-	3e+0	At5g21280	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.4	97.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM206319	Lower pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.5	96.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.7	95.4	GSM206313	Upper pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.5	95.1	GSM206324	Upper pulvinus 2 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.5	95.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-1	34	Zm.18489.1.A1_at	CO525170	hypothetical protein LOC100193250	-	3e-2	At4g31410	unknown protein	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.10623.1.S1_at	BQ619115	hypothetical protein LOC100192478	-	4e-3	At5g56630	PFK7 (PHOSPHOFRUCTOKINASE 7)	C.G.	S.X.	Please select
0.03	3e+0	32	ZmAffx.968.1.S1_at	AI833843	-	-	2e+0	At5g67110	ALC (ALCATRAZ)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.9761.1.A1_at	CF626018	hypothetical protein LOC100277366	-	7e+0	At4g25050	ACP4 (acyl carrier protein 4)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.5964.1.S1_a_at	AY109203.1	zinc finger C-x8-C-x5-C-x3-H type family protein	-	6e-4	At4g21610	LOL2 (LSD ONE LIKE 2)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.5964.1.A1_at	AY109203.1	-	-	6e-4	At4g21610	LOL2 (LSD ONE LIKE 2)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.5157.1.A1_at	CF638048	-	-	5e-14	At5g45030	catalytic	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.4926.1.A1_at	AA979783	propionyl-CoA carboxylase	-	2e-7	At1g01770	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.3122.1.A1_at	CB381414	microtubule motor	-	6e-7	At1g23220	dynein light chain type 1 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	38	Arabidopsis thaliana	At2g47760	819388	ALG3	F:alpha-1,3-mannosyltransferase activity, catalytic activity;P:protein amino acid glycosylation;C:endoplasmic reticulum;MFOPAB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	3e-6	54	Glycine max	GmaAffx.71393.1.S1_at	AW704787	-	-	4e-10	At2g47760	ALG3	C.G.	S.X.	Please select
0.03	1e+1	30	Hordeum vulgare	Contig26439_at	Contig26439	-	-	1e+1	At5g26950	AGL93	C.G.	S.X.	Please select
0.16	2e-32	141	Oryza sativa	Os01g0172000	AK068405.1	-	Hypothetical protein	6e-5	At2g47760	ALG3	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	3e+0	34	Populus trichocarpa	PtpAffx.115018.1.A1_at	CV254773	hypothetical protein	-	8e-6	At2g47760	ALG3	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.23	2e-21	103	Triticum aestivum	TaAffx.31516.1.A1_at	CK207762	-	-	4e-4	At2g47760	ALG3	C.G.	S.X.	Please select
0.03	8e+0	30	Vitis vinifera	1619049_at	CF204385.1	-	-	4e-1	At3g59620	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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