Gene omics information

Query gene ID	Zm.18460.1.S1_at
Gene name	hypothetical protein LOC100216873
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.18460.1.S1_at	CO521354	hypothetical protein LOC100216873	-	8e-3	At1g60430	ARPC3 (actin-related protein C3)	S.X.	H.G.	Please select
0.73	89.9	Zm.18085.1.S1_at	CK986038	hypothetical protein LOC100274126	-	5e-11	At5g13800	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.9649.1.A1_at	BM337167	hypothetical protein LOC100277264	-	1e+0	At1g43720	unknown protein	S.X.	H.G.	Please select
0.47	59.9	Zm.2234.3.A1_a_at	CO526105	hypothetical protein LOC100273895	-	9e-9	At4g17180	glycosyl hydrolase family 17 protein	S.X.	H.G.	Please select
0.40	48.5	Zm.13712.1.S1_at	AY106534.1	-	-	4e+0	At2g46640	unknown protein	S.X.	H.G.	Please select
0.23	18.6	ZmAffx.1198.1.S1_at	BE056195	-	-	2e-1	At1g75040	PR5 (PATHOGENESIS-RELATED GENE 5)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.4	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
3.1	94.3	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
2.5	92.6	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	8e-1	34	Zm.5762.1.A1_at	AI649475	hypothetical protein LOC100194161	-	9e-53	At1g77490	TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE)	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.5558.3.S1_at	BQ539339	RNA binding protein	-	6e-2	At5g48650	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.9567.1.S1_at	BM378205	-	-	5e-10	At5g10780	-	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.3423.1.A1_at	AY110813.1	hypothetical protein LOC100280412	-	3e-3	At4g24040	TRE1 (TREHALASE 1)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.3423.1.S1_at	AY110813.1	-	-	3e-3	At4g24040	TRE1 (TREHALASE 1)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.3090.1.S1_at	AY104155.1	hypothetical protein LOC100192770	-	2e-4	At4g27320	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.3090.1.S1_a_at	AY104155.1	hypothetical protein LOC100192770 /// USP family protein	-	2e-4	At4g27320	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.17927.1.S1_at	CA403602	CTP synthase	-	4e-28	At4g02120	CTP synthase, putative / UTP--ammonia ligase, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.17510.1.A1_at	CK144409	hypothetical protein LOC100217109	-	6e-22	At1g08970	NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	8e-3	42	Arabidopsis thaliana	At1g60430	842338	ARPC3 (actin-related protein C3)	F:structural molecule activity;P:actin filament organization;C:Arp2/3 protein complex;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	2e-19	97	Glycine max	GmaAffx.76063.1.S1_at	BG237370	-	-	2e-31	At1g60430	ARPC3 (actin-related protein C3)	C.G.	S.X.	Please select
0.43	4e-80	297	Hordeum vulgare	HVSMEk0005F11r2_at	HVSMEk0005F11r2	-	-	3e-1	At1g60430	ARPC3 (actin-related protein C3)	C.G.	S.X.	Please select
0.32	3e-87	323	Oryza sativa	Os02g0235000	9630.m01296	-	ARP2/3 complex, 21 kDa p21-Arc subunit familyprotein	2e+0	At1g60430	ARPC3 (actin-related protein C3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.31	5e-8	59	Populus trichocarpa	Ptp.4558.1.S1_at	CK114038	hypothetical protein	-	1e-65	At1g60430	ARPC3 (actin-related protein C3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.50	5e-152	537	Triticum aestivum	Ta.24619.1.S1_at	BJ239506	-	-	4e-4	At1g60430	ARPC3 (actin-related protein C3)	C.G.	S.X.	Please select
0.10	1e-11	69	Vitis vinifera	1608226_at	CF516471	hypothetical protein LOC100262695	-	7e-37	At1g60430	ARPC3 (actin-related protein C3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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