Gene omics information

Query gene ID	Zm.18405.1.A1_at
Gene name	hypothetical protein LOC100193248
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.18405.1.A1_at	CO521227	hypothetical protein LOC100193248	-	3e+0	At5g01881	unknown protein	S.X.	H.G.	Please select
0.80	94.0	Zm.5919.1.S1_at	AI795365	-	-	4e-2	At1g59750	ARF1 (AUXIN RESPONSE FACTOR 1)	S.X.	H.G.	Please select
0.73	89.9	Zm.10135.1.A1_at	BM381166	-	-	1e+0	At5g47550	cysteine protease inhibitor, putative / cystatin, putative	S.X.	H.G.	Please select
0.56	74.4	Zm.5101.1.S1_at	AY110556.1	hypothetical protein LOC100193724	-	1e-3	At3g01300	protein kinase, putative	S.X.	H.G.	Please select
0.36	41.3	Zm.18281.1.S1_at	BG840860	hypothetical protein LOC100277869	-	5e-1	At1g56530	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.19	12.8	Zm.15975.1.A1_at	AY109347.1	-	-	5e-2	At4g17560	ribosomal protein L19 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.2	98.5	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
10.0	98.4	GSM206303	Upper pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.9	97.9	GSM206309	Lower pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.6	97.9	GSM206304	Upper pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.3	97.8	GSM206297	Lower pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.7	97.2	GSM206291	Upper pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.6	97.1	GSM206308	Lower pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.5	96.3	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.5	96.3	GSM206298	Lower pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.1	95.9	GSM206302	Upper pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e-1	34	Zm.3478.1.S1_a_at	AY124703.1	sucrose synthase2	-	4e-47	At5g49190	SUS2 (SUCROSE SYNTHASE 2)	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.18811.1.A1_at	CK985724	deoxy xylulose synthase 1	-	6e-6	At4g15560	CLA1 (CLOROPLASTOS ALTERADOS 1)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.17690.2.A1_a_at	CF624554	dirigent-like protein	-	1e+0	At4g18070	unknown protein	C.G.	S.X.	Please select
0.04	5e+0	30	ZmAffx.304.1.A1_at	AI670437	-	-	1e-2	At3g48890	ATMP2	C.G.	S.X.	Please select
0.04	5e+0	30	ZmAffx.304.1.S1_at	AI670437	-	-	1e-2	At3g48890	ATMP2	C.G.	S.X.	Please select
0.04	5e+0	30	ZmAffx.228.1.A1_at	AI670240	-	-	5e-2	At5g59000	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.04	5e+0	30	ZmAffx.228.1.S1_at	AI670240	-	-	5e-2	At5g59000	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.9646.1.A1_at	BM334563	negatively light-regulated protein	-	5e+0	At1g32700	zinc-binding family protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.7030.1.S1_at	CA404945	-	-	3e+0	At3g22425	IGPD	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	32	Arabidopsis thaliana	At5g01881	3770616	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.6637.1.S1_at	AI900554	MYB transcription factor MYB186	-	8e-7	At1g01060	LHY (LATE ELONGATED HYPOCOTYL)	C.G.	S.X.	Please select
0.06	5e-19	93	Hordeum vulgare	Contig10562_at	Contig10562	-	-	1e-3	At2g28830	binding / structural constituent of ribosome / ubiquitin-protein ligase	C.G.	S.X.	Please select
0.06	8e-21	101	Oryza sativa	Os02g0732200	AK102091.1	-	U box domain containing protein	1e-9	At1g23030	armadillo/beta-catenin repeat family protein / U-box domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.17739.1.A1_at	CV274638	-	-	1e+0	At2g37950	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	2e-17	89	Triticum aestivum	Ta.9509.1.S1_at	BJ285317	-	-	5e-4	At1g23030	armadillo/beta-catenin repeat family protein / U-box domain-containing protein	C.G.	S.X.	Please select
0.05	4e+0	30	Vitis vinifera	1606782_x_at	CF201922.1	-	-	2e+0	At5g01881	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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